Hi all, I've been trying to install Scrubber for some time now and am running into a few issues that I can't seem to get around.
I'm on a fresh CentOS 7 install, ssh'd in. MySQL installed and configured, Java installed. I downloaded the Scrubber directory from https://svn.apache.org/repos/asf/ctakes/sandbox/ctakes-scrubber-deid/, uploaded it to /home/ as "/home/centos/scrubber/" then moved the contents of the /lib/ directory in http://repo.open.med.harvard.edu/nexus/content/repositories/releases/org/spin/scrubber/scrubber/3.0/scrubber-3.0-3.0-dist.zip to the same lib directory in /ctakes-scrubber-deid/. I also set SCRUBBER_HOME in setClassPath.sh as `/home/centos/scrubber` but when I try to run ./install.sh I get the following error: ./setClassPath.sh: line 5: /home/centos/scrubber/: Is a directory ls: cannot access /lib/*.jar: No such file or directory Error: Could not find or load main class org.spin.scrubber.templates.TemplateFileProcessor Error: Could not find or load main class org.spin.scrubber.ScrubberProperties ./install.sh: line 8: ./scrubber.properties.sh: No such file or directory Creating database and user Prompting for root password It then proceeds to download and install cTAKES and WEKA with no apparent issues. Does anyone have any thoughts on what I might be doing wrong? Evan Sholle, MS Manager, Research Informatics Services Weill Cornell Medicine Information Technologies & Services 575 Lexington Ave, 3rd Floor New York, NY 10022 T: 646.962.6862 C: 914.462.2780 [email protected]
