Great! I've followed your instructions step by step and I succeeded in installing cTAKES. Everything was exactly as you said it would be!
Thank you very much for your help Best Roberto On Thu, Dec 17, 2020 at 1:04 PM Alain Leblanc <aal...@gmail.com> wrote: > OK then. > > > > You mentioned Microsoft in your original post so I thought you were doing > everything with windows. Anyway first step is to check out the code: I > would create a new directory, go into it then type: > > > > svn co https://svn.apache.org/repos/asf/ctakes/trunk/ > > > > This will create a ‘trunk’ directory. Go into it, type > > > > mvn compile > > > > This will compile and test the code. You may want to grab a coffee or a > beer while it’s running. At the end it will tell you if there’s any error. > If there’s no error type > > > > mvn install > > > > When this is done you will have a file > ./org/apache/ctakes/ctakes-distribution/4.0.1-SNAPSHOT/ctakes-distribution-4.0.1-SNAPSHOT-bin.zip. > > > > > From there you follow the instructions on > https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+4.0+User+Install+Guide, > including the addition of ctakes-resources, modifying the file/path names > based on your new package name. > > > > The only step not included in the instructions is how to add your key. If > you’re the only one using your computer you can just add the lines > > > > set ctakes.umls_apikey=<your key> > > set ctakes.umlsaddr=https://utslogin.nlm.nih.gov/cas/v1/api-key > > > > (or export ctakes.umls_apikey … if on Linux) > > > > on top of the runctakesCVD.bat file (or .sh, on Linux), or add the options > to the command line as explained in the instructions (-Dctakes.umls_...). I > suspect that setting ctakes.umlsaddr won’t be necessary in the final > version, but when I tested last week the old URL was being used if this > option was not set. > > > > Let us know how it works for you. > > > > A > > > > > > > > > > > > > > *From: *Roberto Zanoli <zan...@fbk.eu> > *Sent: *Thursday, December 17, 2020 5:36 AM > *To: *user@ctakes.apache.org > *Subject: *Re: How to add the UMLS credential [EXTERNAL] > > > > > > Thanks Alain. I'm used to linux but I've created the installation for > windows to be aligned with you. > > I think I'm ready to follow the next steps. > > > > On Wed, Dec 16, 2020 at 5:22 PM Alain Leblanc <aal...@gmail.com> wrote: > > Sure Roberto. > > > > I don't know how much of a programmer you are and how comfortable you are > with using the command line (on windows using the powershell or the old > Command Prompt program) and installing software. You may need a bit of time > to learn the basic commands, but it may come handy later. I assume you're > on Windows. Let me know if you're using something else. > > > > The first step would be to install java 8, subversion and maven. > > > > You have many options for subversion. I would suggest SilkSVN since it > doesn't try to take over your machine. Download link is > https://sliksvn.com/download/ > > > > You need to install java 8 before Maven. Link is > https://www.oracle.com/java/technologies/javase/javase-jdk8-downloads.html. > You may have to register with Oracle. You need the > file jdk-8u271-windows-x64.exe (as of today). The 8u271 part may change if > a new version is released. > > > > Then for maven there are good instructions here: > https://www.baeldung.com/install-maven-on-windows-linux-mac > > > > > > Let me know when they are installed. > > > > a > > > > > > > > > > > > > > > > Le mer. 16 déc. 2020 à 10:18, Roberto Zanoli <zan...@fbk.eu> a écrit : > > > > > > On Wed, Dec 16, 2020 at 3:30 PM Miller, Timothy < > timothy.mil...@childrens.harvard.edu> wrote: > > That's unfortunate but great to know, and good to know about the > changes you needed as well. > Thanks > Tim > > On Wed, 2020-12-16 at 08:31 -0500, Alain Leblanc wrote: > > * External Email - Caution * > > > > The old user/password method stopped working for me a week or so ago. > > However I was able to use the api key method after checking out the > > latest (as of last week) source code from subversion and building > > locally. The only changes I had to make was to set the environment > > variables ctakes.umlsaddr to > > https://utslogin.nlm.nih.gov/cas/v1/api-key (otherwise the old url > > was used) and ctakes.umls_apikey to my api key. > > > > Roberto if you need more detailed instructions I can post them. > > > > It would be very useful if you could provide some more information > > Thanks a lot > > Roberto > > > > > > > > > a > > > > > > Le mer. 16 déc. 2020 à 06:37, Miller, Timothy < > > timothy.mil...@childrens.harvard.edu> a écrit : > > > Hi Roberto, > > > The existing mechanism should be functional until January 15. After > > > that point changes to the cTAKES code are required to use the new > > > UMLS authentication mechanism. We are working on this and will > > > release patches and/or new releases. > > > > > > Tim > > > > > > > > > On Wed, 2020-12-16 at 10:12 +0100, Roberto Zanoli wrote: > > > > * External Email - Caution * > > > > > > > > > > > > Dear All, > > > > > > > > I'm new to cTAKES and I'd like to analyze some texts by using > > > > AggregatePlaintextUMLSProcessor that requires the UMLS resource. > > > > > > > > According to the runctakesCVD file, to enable the use of the UMLS > > > > resources you have to set your UMLS credential, i.e., > > > > Dctakes.umlsuser, Dctakes.umlspw > > > > > > > > Since, UMLS Terminology Services accounts have been migrated to a > > > > service that allows you to sign in to UTS using Google, > > > Microsoft, > > > > ... I don't have any username and password with which to set the > > > > variables above. Do you have any suggestions? > > > > > > > > Thanks in advance > > > > Roberto > > > > > > > > > > > > > > > > > > > > -- > > > > Le informazioni contenute nella presente comunicazione sono di > > > > natura privata e come tali sono da considerarsi riservate ed > > > > indirizzate esclusivamente ai destinatari indicati e per le > > > finalità > > > > strettamente legate al relativo contenuto. Se avete ricevuto > > > questo > > > > messaggio per errore, vi preghiamo di eliminarlo e di inviare una > > > > comunicazione all’indirizzo e-mail del mittente. > > > > -- > > > > The information transmitted is intended only for the person or > > > entity > > > > to which it is addressed and may contain confidential and/or > > > > privileged material. 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