I had originally gotten several errors with the TypeSystem file. It may have been a version issue, I don't know. All I do know is that casis is a great tool to tie UIMA CAS XMI objects into a python workflow.
On Thu, Dec 16, 2021 at 11:05 AM Dligach, Dmitriy <ddlig...@luc.edu> wrote: > Greg, > > > > I’m curious why you said that you needed to create a modified type system > file? I’m using the same type system file that comes with cTAKES and > haven’t run into any issues. > > > > Best, > > Dima > > > > > > *From: *Greg Silverman <g...@umn.edu> > *Date: *Thursday, December 16, 2021 at 09:49 > *To: *user@ctakes.apache.org <user@ctakes.apache.org> > *Subject: *Re: XMI ouput > > This works great: https://github.com/dkpro/dkpro-cassis > > > > You'll initially need to create a modified TypeSystem.xmi file, but after > that you should be good to go. > > > > Greg-- > > > > On Mon, Dec 13, 2021 at 12:35 PM Daniel Knox <dan.k...@imail.org> wrote: > > Sorry for the newbie followup question. I have been able to get the > default clinical pipeline to run, and to play with html writer (add > pretty.html.HtmlTextWriter) and property text writer. Does anyone have a > way to parse the output files into csv or other format that I can then feed > to a larger database program? > > > > I have tried both of these but I am still having issues since both seem to > be breaking for me. > > https://github.com/JuliaHealth/CTakesParser.jl > > https://pypi.org/project/ctakes-parser/ > > > > Thank you to anyone who can help. I am happy to add someone to the > authors list of the paper that this is generating if you want to help me > through this processing. > > > > Daniel Knox > > > > NOTICE: This e-mail is for the sole use of the intended recipient and may > contain confidential and privileged information. If you are not the > intended recipient, you are prohibited from reviewing, using, disclosing or > distributing this e-mail or its contents. If you have received this e-mail > in error, please contact the sender by reply e-mail and destroy all copies > of this e-mail and its contents. > > > > -- > > Greg M. Silverman > > Senior Systems Developer > > NLP/IE <https://healthinformatics.umn.edu/research/nlpie-group> > > Department of Surgery > > University of Minnesota > > g...@umn.edu > > > -- Greg M. Silverman Senior Systems Developer NLP/IE <https://healthinformatics.umn.edu/research/nlpie-group> Department of Surgery University of Minnesota g...@umn.edu
