The issue is that I use Hadoop 2.4.1, I don't think I can upgrade it easily and the compilation with hadoop_2 fails:
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.0:compile (default-compile) on project giraph-core: Compilation failure: Compilation failure: [ERROR] /usr/local/giraph-1.1.0/giraph-core/src/main/java/org/apache/giraph/comm/netty/SaslNettyServer.java:[113,32] getDefaultProperties() has protected access in org.apache.hadoop.security.SaslPropertiesResolver [ERROR] /usr/local/giraph-1.1.0/giraph-core/src/main/java/org/apache/giraph/comm/netty/SaslNettyClient.java:[93,32] getDefaultProperties() has protected access in org.apache.hadoop.security.SaslPropertiesResolver So, with mapreduce I cannot compile it and with yarn I cannot use it. Thanks, Roberto On Sat, 2015-11-07 at 15:49 -0800, Roman Shaposhnik wrote: > Why do you want to run this as YARN app? Why not use > good old MapReduce? > > Thanks, > Roman. > > On Thu, Nov 5, 2015 at 5:54 AM, Roberto Gonzalez > <[email protected]> wrote: > > Hi all again, > > > > After compiling the version 1.1 I found the following bug: > > > > https://issues.apache.org/jira/browse/GIRAPH-859 > > > > I applied the patch and disable the permissions in the HDFS (I would > > want not to do that... but I can accept it). > > > > but still executing the example as: > > > > > > hadoop jar giraph-ex.jar org.apache.giraph.GiraphRunner > > org.apache.giraph.examples.SimpleShortestPathsComputation -vif > > org.apache.giraph.io.formats.JsonLongDoubleFloatDoubleVertexInputFormat > > -vip tiny_graph.txt -vof > > org.apache.giraph.io.formats.IdWithValueTextOutputFormat -op > > shortestpaths -yj giraph-ex.jar -w 1 > > > > > > The program runs for about 10 minutes (the example graph has 5 nodes) > > before failing. > > > > the gam-stderr.log file only contains info about SLF4J, and the > > gam-stdout.log finish with: > > > > Container exited with a non-zero exit code 143 > > > > 2015-11-05 14:25:39,340 INFO [AMRM Callback Handler Thread] > > yarn.GiraphApplicationMaster > > (GiraphApplicationMaster.java:onContainersCompleted(605)) - After > > completion of one conatiner. current status is: completedCount :1 > > containersToLaunch :2 successfulCount :0 failedCount :1 > > 2015-11-05 14:26:13,414 INFO [AMRM Callback Handler Thread] > > yarn.GiraphApplicationMaster > > (GiraphApplicationMaster.java:onContainersCompleted(580)) - Got response > > from RM for container ask, completedCnt=1 > > 2015-11-05 14:26:13,414 INFO [AMRM Callback Handler Thread] > > yarn.GiraphApplicationMaster > > (GiraphApplicationMaster.java:onContainersCompleted(583)) - Got container > > status for containerID=container_1446634690791_0024_01_000003, > > state=COMPLETE, exitStatus=2, diagnostics=Exception from container-launch: > > org.apache.hadoop.util.Shell$ExitCodeException: > > org.apache.hadoop.util.Shell$ExitCodeException: > > at org.apache.hadoop.util.Shell.runCommand(Shell.java:505) > > at org.apache.hadoop.util.Shell.run(Shell.java:418) > > at > > org.apache.hadoop.util.Shell$ShellCommandExecutor.execute(Shell.java:650) > > at > > org.apache.hadoop.yarn.server.nodemanager.DefaultContainerExecutor.launchContainer(DefaultContainerExecutor.java:195) > > at > > org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:300) > > at > > org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:81) > > at java.util.concurrent.FutureTask.run(FutureTask.java:266) > > at > > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) > > at > > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) > > at java.lang.Thread.run(Thread.java:745) > > > > > > Container exited with a non-zero exit code 2 > > > > 2015-11-05 14:26:13,415 INFO [AMRM Callback Handler Thread] > > yarn.GiraphApplicationMaster > > (GiraphApplicationMaster.java:onContainersCompleted(603)) - All container > > compeleted. done = true > > 2015-11-05 14:26:13,543 INFO [main] yarn.GiraphApplicationMaster > > (GiraphApplicationMaster.java:run(195)) - Done true > > 2015-11-05 14:26:13,543 INFO [main] yarn.GiraphApplicationMaster > > (GiraphApplicationMaster.java:run(207)) - Forcefully terminating executors > > with done =:true > > 2015-11-05 14:26:13,543 INFO [main] yarn.GiraphApplicationMaster > > (GiraphApplicationMaster.java:finish(221)) - Application completed. > > Stopping running containers > > 2015-11-05 14:26:13,578 INFO [main] impl.ContainerManagementProtocolProxy > > (ContainerManagementProtocolProxy.java:mayBeCloseProxy(145)) - Closing > > proxy : computer62:59272 > > 2015-11-05 14:26:13,579 INFO [main] impl.ContainerManagementProtocolProxy > > (ContainerManagementProtocolProxy.java:mayBeCloseProxy(145)) - Closing > > proxy : computer66:45051 > > 2015-11-05 14:26:13,579 INFO [main] yarn.GiraphApplicationMaster > > (GiraphApplicationMaster.java:finish(226)) - Application completed. > > Signalling finish to RM > > 2015-11-05 14:26:13,586 INFO [main] impl.AMRMClientImpl > > (AMRMClientImpl.java:unregisterApplicationMaster(321)) - Waiting for > > application to be successfully unregistered. > > 2015-11-05 14:26:13,688 INFO [main] yarn.GiraphApplicationMaster > > (GiraphApplicationMaster.java:main(454)) - Giraph Application Master > > failed. exiting > > 2015-11-05 14:26:13,688 INFO [AMRM Callback Handler Thread] > > impl.AMRMClientAsyncImpl (AMRMClientAsyncImpl.java:run(277)) - Interrupted > > while waiting for queue > > java.lang.InterruptedException > > at > > java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.reportInterruptAfterWait(AbstractQueuedSynchronizer.java:2014) > > at > > java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2048) > > at > > java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:442) > > at > > org.apache.hadoop.yarn.client.api.async.impl.AMRMClientAsyncImpl$CallbackHandlerThread.run(AMRMClientAsyncImpl.java:275) > > > > > > Moreover, even when the exception is 1 minute after the program starts, > > it last more than 10 minutes to finish. > > > > Do you have any idea?? > > > > Thanks. > > > > > > > > > > -- > > Dr. Roberto Gonzalez > > Research Scientist, Networked Systems and Data Analytics Group > > NEC Europe Ltd. > > NEC Laboratories Europe > > Kurfürsten-Anlage 36 > > > > D-69115 Heidelberg > > > > phone +49 6221 4342 256 > > fax +49 6221 4342 155 > > e-mail: [email protected] > > > > NEC Europe Ltd | Registered Office: Athene, Odyssey Business Park, West End > > Road, > > London, HA4 6QE, GB | Registered in England 2832014 -- Dr. Roberto Gonzalez Research Scientist, Networked Systems and Data Analytics Group NEC Europe Ltd. NEC Laboratories Europe Kurfürsten-Anlage 36 D-69115 Heidelberg phone +49 6221 4342 256 fax +49 6221 4342 155 e-mail: [email protected] NEC Europe Ltd | Registered Office: Athene, Odyssey Business Park, West End Road, London, HA4 6QE, GB | Registered in England 2832014
