@xieliang: I will try the PrintGCApplicationStoppedTime, thank you.

About loading, total requestPerSeconds is around 15000~30000 for 9 servers, 
with numberOfOnlineRegions = 136.


I also just uploaded the log files of gc and regionserver into dropbox:

https://dl.dropboxusercontent.com/u/60149953/gc-hbase.log.20131023

https://dl.dropboxusercontent.com/u/60149953/hbase-hadoop-regionserver-fchddn2.log


My setup is:

CentOS release 6.1 (Final)

Kernel 2.6.32-131.0.15.el6.x86_64 on an x86_64

Hadoop 1.0.4

HBase 0.94.6

HBASE_REGIONSERVER_OPTS="-XX:+UseParNewGC -Xmn256m 
-XX:CMSInitiatingOccupancyFraction=70 -Xmx6000m -verbose:gc -XX:+PrintGCDetails 
-XX:+PrintGCDateStamps -XX:+UseGCLogFileRotation -XX:NumberOfGCLogFiles=2 
-XX:GCLogFileSize=256M -Xloggc:/data1/hadoop/gc-hbase.log"

ulimit -a:
core file size          (blocks, -c) 0
data seg size           (kbytes, -d) unlimited
scheduling priority             (-e) 0
file size               (blocks, -f) unlimited
pending signals                 (-i) 62853
max locked memory       (kbytes, -l) 64
max memory size         (kbytes, -m) unlimited
open files                      (-n) 65535
pipe size            (512 bytes, -p) 8
POSIX message queues     (bytes, -q) 819200
real-time priority              (-r) 0
stack size              (kbytes, -s) 10240
cpu time               (seconds, -t) unlimited
max user processes              (-u) 32639
virtual memory          (kbytes, -v) unlimited
file locks                      (-x) unlimited


-----Original Message-----
From: 谢良 [mailto:[email protected]]
Sent: Wednesday, October 23, 2013 2:54 PM
To: [email protected]
Subject: 答复: What cause region server to timeout other than long gc?

Maybe you can try to add "-XX:+PrintGCApplicationStoppedTime", then if other 
ops(not gc) caused the long safepoint duration, you could find the log.
btw, did you have a high load during that time:)

Best,
Liang

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