As I know JdkMarshaller used for serialization of internal ignite objects,
such as continuous query, distributed services etc., not for cache entries.

In your case the exception occured during deserialization of object
This class is from cache-api library. Ignite use version 1.0.0 of this
library. In this version the class MutableConfiguration has serialVersionUID
= 201306200821L.
Your sample app in eclipse used some other version of cache-api
(MutableConfiguration has serialVersionUID = 201405).
This cause of exception.

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