If your project in PHP I can recommend Pinba <http://pinba.org/> and XHProf <https://github.com/facebook/xhprof> . If Java then maybe Netbeans profiler. If you want profile your production server during load testing New Relic would be good solution as supports almost all coding languages and has built-in integration with Jmeter. In one time with New Relic plugin <http://community.blazemeter.com/knowledgebase/articles/214577-blazemeter-plugin-for-new-relic> you can stress your site and profile it to find problems in code.
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