Excellent... I did a code review and think this is a huge improvement over what 
we had.
Peter, can you pull these changes, I no longer have the privs to do so.
Niels

> Date: Thu, 8 Sep 2011 17:24:44 +1200
> From: [email protected]
> To: [email protected]
> Subject: Re: [Neo4j] Issues with IndexedRelationship
> 
> I have made the changes in regards to SortedTree in regards to relationships
> vs nodes, and have got all the tests passing.  The changes are pushed up to
> my github account (and pull request has been raised).
> 
> The changes can be seen here:
> https://github.com/brycenz/graph-collections
> 
> On Thu, Sep 8, 2011 at 3:41 PM, Bryce <[email protected]> wrote:
> 
> > Another thought if there is going to be a larger refactor of the code is
> > whether the indexing mechanism should be broken out as a strategy for the
> > IndexedRelationship.  At present it is tied to SortedTree, but if an
> > interface was extracted out that had addNode, removeNode, iterator, and
> > isUniqueIndex then other indexing implementations could be used in certain
> > cases.
> >
> > The particular other implementation I am currently thinking of that could
> > be of use to me would be a paged linked list.  So that would have a linked
> > list of pages, each with min < x < max KEY_VALUE (or equivalent)
> > relationships.  I think that could work quite well for the situation where
> > the index is descending date ordered, and generally just appended at the
> > most recent end, and results are retrieved in a paged manner generally from
> > near the most recent.
> >
> > But more to the point there could be any number of implementations that
> > would be good for given different situations.
> >
> > That does bring up a question though, there was some discussion a while ago
> > about some functionality along the lines of IndexedRelationship being pulled
> > into the core, so is that overkill for now if there is going to be another
> > core offering later?
> >
> >
> > On Thu, Sep 8, 2011 at 2:38 PM, Niels Hoogeveen <[email protected]
> > > wrote:
> >
> >>
> >> I think we don't have to worry about backwards compatibility much yet.
> >> There has not been a formal release of the component, so if there are 
> >> people
> >> using the software, they will accept that they are bleeding edgers.
> >> Indeed addNode should return the KEY_VALUE relationship and I think we
> >> should change the signature of SortedTree to turn it into
> >> Iterable<Relationship>. No need to maintain a Node iterator, the node is
> >> always one getEndNode away.
> >> Niels
> >>
> >> > Date: Thu, 8 Sep 2011 14:17:59 +1200
> >> > From: [email protected]
> >> > To: [email protected]
> >> > Subject: Re: [Neo4j] Issues with IndexedRelationship
> >> >
> >> > Will have to experiment with changing my id's to be stored as longs, it
> >> does
> >> > make perfect sense really that it would be better.  Thanks for the hint.
> >> >
> >> > In regards to SortedTree returning the KEY_VALUE relationship instead of
> >> the
> >> > end Node, I had thought of that too, and it would definitely help.
> >>  Could
> >> > end up being a significant change to SortedTree though, e.g.:
> >> >   sortedTree.addNode( node );
> >> > Would need to return the KEY_VALUE relationship instead of a boolean.
> >>  Which
> >> > not knowing where else SortedTree is used could be a large change?
> >> >
> >> > Maybe SortedTree would have two iterator's available a key_value
> >> > relationship iterator, and a node iterator.  Having a quick look at it
> >> now
> >> > it seems that it could work ok that way without introducing much code
> >> > duplication.
> >> >
> >> > On Thu, Sep 8, 2011 at 12:46 PM, Niels Hoogeveen
> >> > <[email protected]>wrote:
> >> >
> >> > >
> >> > > Two longs is certainly cheaper than a string. Two longs take 128 bit
> >> and
> >> > > are stored in the main record of the PropertyContainer, while a String
> >> would
> >> > > require a 64 bit "pointer" in the main record of the
> >> PropertyContainer, and
> >> > > an additional read in the String store where the string representation
> >> will
> >> > > take up 256 bits. So both memory-wise, as perfomance wise, it is
> >> better to
> >> > > store a UUID as two long values.
> >> > >
> >> > >
> >> > > The main issue is something that needs a deeper fix than adding ID's.
> >> > > SortedTree now returns Nodes when traversing the tree. We should
> >> however
> >> > > return the KEY_VALUE Relationship to the indexed Node. Then
> >> > > IndexedRelationship.DirectRelationship can be created with that
> >> relationship
> >> > > as an argument. We get the Direction and the RelationshipType for
> >> free.
> >> > > Niels
> >> > >
> >> > > > Date: Thu, 8 Sep 2011 11:36:11 +1200
> >> > > > From: [email protected]
> >> > > > To: [email protected]
> >> > > > Subject: Re: [Neo4j] Issues with IndexedRelationship
> >> > > >
> >> > > > Hi Niels,
> >> > > >
> >> > > > Sorry I didn't quite write the bit about (1) clearly enough.  The
> >> problem
> >> > > is
> >> > > > that it presently throws an Exception where it shouldn't.
> >> > > >
> >> > > > This stems from IndexedRelationship.DirectRelationship:
> >> > > > this.endRelationship = endNode.getSingleRelationship(
> >> > > > SortedTree.RelTypes.KEY_VALUE, Direction.INCOMING );
> >> > > >
> >> > > > So if the end node has more than one incoming KEY_VALUE relationship
> >> a
> >> > > more
> >> > > > than one relationship exception is thrown.
> >> > > >
> >> > > > Instead of the getSingleRelationship I was planning on iterating
> >> over the
> >> > > > relationships and matching the UUID stored at the root end of the IR
> >> with
> >> > > > one of the KEY_VALUE relationships (which is why using a unique id
> >> is
> >> > > > necessary rather than the relationship type).  Note: there will
> >> actually
> >> > > > still be an issue if the same IR has multiple relationships to the
> >> same
> >> > > leaf
> >> > > > node - still thinking about that might need .
> >> > > >
> >> > > > Is storing the UUID as two longs much quicker than storing it as a
> >> > > string?
> >> > > >  Curious about this since in my current model I have all the domain
> >> > > objects
> >> > > > with UUID's, and these are all stored as strings.  If it was going
> >> to
> >> > > help
> >> > > > with either memory or performance then I would be keen to migrate
> >> this to
> >> > > > two longs.
> >> > > >
> >> > > > Cheers
> >> > > > Bryce
> >> > > >
> >> > > > On Thu, Sep 8, 2011 at 11:07 AM, Niels Hoogeveen
> >> > > > <[email protected]>wrote:
> >> > > >
> >> > > > >
> >> > > > > Great work Bryce,
> >> > > > > I do have a question though.
> >> > > > > What is the rationale for the restriction mentioned under "1)". Do
> >> you
> >> > > need
> >> > > > > this for the general case (to make IndexedRelationshipExpander
> >> work
> >> > > > > correctly), or do you need it for your own application to throw
> >> that
> >> > > > > exception? If the latter is the case, I think it would be
> >> important to
> >> > > tease
> >> > > > > out the general case and offer this new behaviour as an option.
> >> > > > > A unique key for the index is a good idea anyway and can be added
> >> to
> >> > > > > SortedTree. Generate a UUID and store it in two long properties.
> >> That
> >> > > way
> >> > > > > the two values will always be read in the first fetch of the
> >> underlying
> >> > > > > PropertyContainer. A getId method on the TreeNodes can then return
> >> a
> >> > > String
> >> > > > > representation of of the two long values.
> >> > > > > IndexRelationships are a relatively new development, so I think
> >> you are
> >> > > one
> >> > > > > of the first to actually try it out. Personally I have chosen to
> >> > > directly
> >> > > > > work with SortedTree, because I am working within the framework of
> >> a
> >> > > wrapper
> >> > > > > API, so I can integrate the functionality behind the regular
> >> > > > > createRelationshipTo and getRelationships methods.
> >> > > > > I don't think API changes will be an issue at the moment.
> >> > > > > Niels
> >> > > > > > Date: Thu, 8 Sep 2011 10:22:11 +1200
> >> > > > > > From: [email protected]
> >> > > > > > To: [email protected]
> >> > > > > > Subject: [Neo4j] Issues with IndexedRelationship
> >> > > > > >
> >> > > > > > Hi,
> >> > > > > >
> >> > > > > > As I mentioned a while ago I am looking at using
> >> > > IndexedRelationship's
> >> > > > > > within my application.  The major thing that was missing for me
> >> to be
> >> > > > > able
> >> > > > > > to do this was IndexedRelationshipExpander being able to provide
> >> all
> >> > > the
> >> > > > > > relationships from the leaf end of indexed relationships through
> >> the
> >> > > the
> >> > > > > > root end.  So I have been working on getting that support in
> >> there.
> >> > > > > >
> >> > > > > > However in writing this I have discovered a number of other
> >> issues
> >> > > that I
> >> > > > > > have also fixed, and at least one I am still working on.  Since
> >> I was
> >> > > > > right
> >> > > > > > into the extra support for expanding the relationships it is
> >> hard to
> >> > > > > break
> >> > > > > > out these fixes as a separate commit (which I think would be
> >> ideal),
> >> > > so
> >> > > > > it
> >> > > > > > will most likely all come in together hopefully later today (NZ
> >> > > time).
> >> > > > > >
> >> > > > > > Just letting everyone know in case someone else is doing
> >> development
> >> > > > > against
> >> > > > > > indexed relationships.
> >> > > > > >
> >> > > > > > Quick run down of the issues, note: N -- IR(X) --> {A,B} below
> >> means
> >> > > > > there
> >> > > > > > is a indexed relationship from N to A & B, of type X.
> >> > > > > >
> >> > > > > > 1) Exception thrown when more than one IR terminates at a given
> >> node,
> >> > > > > e.g.:
> >> > > > > > N1 -- IR(X) --> {A,B,C,D}
> >> > > > > > N2 -- IR(X) --> {A,X,Y,Z}
> >> > > > > > Will throw an exception when using the
> >> IndexedRelationshipExpander on
> >> > > > > either
> >> > > > > > N1, or N2.
> >> > > > > >
> >> > > > > > 2) Start / End nodes are transposed when the IR has an direction
> >> of
> >> > > > > > incoming, i.e. the IR is created against N but across a set of
> >> > > incoming
> >> > > > > > relationships:
> >> > > > > > N <-- IR(Y) -- {A,B,C}
> >> > > > > > Will return 3 relationships N --> A, N --> B, N --> C.
> >> > > > > >
> >> > > > > > I have written tests for each of these, as well as a couple of
> >> other
> >> > > > > tests.
> >> > > > > >
> >> > > > > > Still completing (1) and have a little question about this.  In
> >> order
> >> > > to
> >> > > > > fix
> >> > > > > > this I may need to introduce a unique ID stored against the IR
> >> both
> >> > > at
> >> > > > > the
> >> > > > > > root and at the leaves.  Currently the relationship type is used
> >> to
> >> > > name
> >> > > > > the
> >> > > > > > IR at both root and leaves, but in the case above that means you
> >> > > can't
> >> > > > > tell
> >> > > > > > from node A which KEY_VALUE relationship belongs to which IR
> >> tree
> >> > > without
> >> > > > > > traversing the tree.
> >> > > > > >
> >> > > > > > So the question is adding this ID would mean that anyone who is
> >> > > already
> >> > > > > > using this wont have the ID, and therefore without care will be
> >> data
> >> > > > > > incompatible with the updated code.  This could be managed via a
> >> > > check
> >> > > > > for
> >> > > > > > the ID when accessing the tree and if it isn't there doing a
> >> walk
> >> > > over
> >> > > > > the
> >> > > > > > tree to populate all the places where it is required.
> >> > > > > >
> >> > > > > > In general in developing against this code where do we sit on
> >> data
> >> > > > > > compatibility and API compatibility?
> >> > > > > >
> >> > > > > > Cheers
> >> > > > > > Bryce
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