Maybe just attach the docker file and make sure layers are available in
docker hub?
On Mon, Oct 17, 2016 at 9:07 AM Mark Hammons <mark.hamm...@inaf.cnrs-gif.fr>
wrote:

> Oh, the container image itself is very large. Do you have some place I can
> upload it to?
>
> On Monday, October 17, 2016 8:43:10 AM CEST Avinash Sridharan wrote:
> > Also would be good to see the env variables (LD_LIBRARY_PATH) being seen
> by
> > the container when you start it, just to make sure the env are getting
> set
> > correctly.
> >
> > On Mon, Oct 17, 2016 at 8:42 AM, Avinash Sridharan <
> avin...@mesosphere.io>
> >
> > wrote:
> > > Does look like the symlink exists:
> > > /usr/lib/libtiff.so.5
> > >
> > > I am assuming you have checked the realpath exists as well (that's why
> was
> > > asking for `ls -al`) ?
> > >
> > > Don't see that you have volume mounts that might obfuscate the path.
> Could
> > > you create a JIRA and if possible point give access to your docker
> image
> > > for us to try? Do mention the exact version of Mesos and the Distro you
> > > are
> > > trying to run this on.
> > >
> > > -Avinash
> > >
> > > On Mon, Oct 17, 2016 at 8:35 AM, Mark Hammons <
> > >
> > > mark.hamm...@inaf.cnrs-gif.fr> wrote:
> > >> No, it's a regular linux log. I've reattached it.
> > >>
> > >> On Monday, October 17, 2016 8:32:07 AM CEST Avinash Sridharan wrote:
> > >> > can't seem to open the attached logs, is it gzip?
> > >> >
> > >> > On Mon, Oct 17, 2016 at 8:14 AM, Mark Hammons <
> > >>
> > >> mark.hamm...@inaf.cnrs-gif.fr
> > >>
> > >> > > wrote:
> > >> > >
> > >> > > Adding LD_LIBRARY_PATH=/usr/lib/x86_64-linux-gnu doesn't fix the
> > >>
> > >> error.
> > >>
> > >> > > On Monday, October 17, 2016 5:06:34 PM CEST Mark Hammons wrote:
> > >> > > > As I've shown in the original logs, the symbolic link
> libtiff.so.5
> > >>
> > >> is in
> > >>
> > >> > > > /usr/ lib. I used LD_PRELOAD just to try to force
> > >>
> > >> /usr/lib/libtiff.so.5
> > >>
> > >> > > to
> > >> > >
> > >> > > > be loaded since it wasn't for some reason.
> > >> > > >
> > >> > > > On Monday, October 17, 2016 8:03:34 AM CEST Avinash Sridharan
> wrote:
> > >> > > > > Can you prepend your command with `ls -al /usr/lib` and check
> in
> > >> > >
> > >> > > stdout if
> > >> > >
> > >> > > > > you are seeing the shared object? By the way why are you using
> > >> > >
> > >> > > LD_PRELOAD
> > >> > >
> > >> > > > > instead of LD_LIBRARY_PATH. LD_PRELOAD will force the linker
> to
> > >>
> > >> load
> > >>
> > >> > > your
> > >> > >
> > >> > > > > library before any other libraries. It's usually used to
> override
> > >> > >
> > >> > > system
> > >> > >
> > >> > > > > libraries so found a bit odd that you are using it here?
> > >> > > > >
> > >> > > > > On Mon, Oct 17, 2016 at 7:54 AM, Mark Hammons
> > >> > > > > <mark.hamm...@inaf.cnrs-gif.fr>
> > >> > > > >
> > >> > > > > > wrote:
> > >> > > > > >
> > >> > > > > > No, but even when I set LD_PRELOAD=/usr/lib/libtiff.so.5 for
> > >>
> > >> the
> > >>
> > >> > > process
> > >> > >
> > >> > > > > > environment it says it can't load /usr/lib/libtiff.so.5.
> > >> > > > > >
> > >> > > > > > On Monday, October 17, 2016 7:52:16 AM CEST Avinash
> Sridharan
> > >>
> > >> wrote:
> > >> > > > > > > Are you setting the env in the dockerfile?
> > >> > > > > > >
> > >> > > > > > > On Mon, Oct 17, 2016 at 6:58 AM, Mark Hammons <
> > >> > > > > >
> > >> > > > > > mark.hamm...@inaf.cnrs-gif.fr
> > >> > > > > >
> > >> > > > > > > > wrote:
> > >> > > > > > > >
> > >> > > > > > > > Here's the code I define my executor to mesos with:
> > >> > > > > > > >         val iuwtURI = CommandInfo.URI.newBuilder().
> > >> > >
> > >> > > setValue("http://
> > >> > >
> > >> > > > > > ***/
> > >> > > > > >
> > >> > > > > > > > IUWT.tar.gz").setExtract(true).setCache(false).build()
> > >> > > > > > > >
> > >> > > > > > > >         val iuwtjURI =
> > >> > > > > > > >         CommandInfo.URI.newBuilder().setValue("http://
> > >> > > > > >
> > >> > > > > > ***/
> > >> > > > > >
> > >> > > > > > > > iuwtExecutor-assembly-0.1-
> > >> > > > > > > >
> SNAPSHOT.jar").setExecutable(false).setCache(false).build()
> > >> > > > > > > >
> > >> > > > > > > >         val iuwtExec = "java -jar
> > >> > > > > > > >         iuwtExecutor-assembly-0.1-SNAPSHOT.jar
> > >> > > > > >
> > >> > > > > > -
> > >> > > > > >
> > >> > > > > > > > Xmx1024M -Xmx128M"
> > >> > > > > > > >
> > >> > > > > > > >         val iuwtCommand =
> > >> > > > > > > >
> > >> > > > > > > > CommandInfo.newBuilder.setValue(iuwtExec).addAllUris(
> > >> > >
> > >> > > List(iuwtjURI,
> > >> > >
> > >> > > > > > > > iuwtURI).asJava).setShell(true).build()
> > >> > > > > > > >
> > >> > > > > > > >         val iuwtImageInfo =
> > >> > > > > > > >
> > >> > > > > > > > Image.newBuilder().setType(Image.Type.DOCKER).setDocker(
> > >> > > > > > > > Image.Docker.newBuilder.setName("ubuntu-
> > >> > > > > > > > mesos:0.11-17102016-IUWT").build()).build()
> > >> > > > > > > >
> > >> > > > > > > >         val iuwtContInfo =
> > >> > > > > > > >
> > >> > > > > > > > ContainerInfo.MesosInfo.newBuilder().setImage(
> > >> > >
> > >> > > iuwtImageInfo).build()
> > >> > >
> > >> > > > > > > >         val iuwtContainer = ContainerInfo.newBuilder()
> > >> > > > > > > >
> > >> > > > > > > >                 .setMesos(iuwtContInfo)
> > >> > > > > > > >
> > >> > > > > > > >           .setType(ContainerInfo.Type.MESOS)
> > >> > > > > > > >           .build()
> > >> > > > > > > >
> > >> > > > > > > >         val iuwtExecutor = ExecutorInfo.newBuilder()
> > >> > > > > > > >
> > >> > > > > > > >                 .setCommand(iuwtCommand)
> > >> > > > > > > >                 .setContainer(iuwtContainer)
> > >> > > > > > > >                 .setExecutorId(ExecutorID.
> > >> > >
> > >> > > newBuilder().setValue("iuw
> > >> > >
> > >> > > > > > > >                 t-
> > >> > > > > > > >
> > >> > > > > > > > executor"))
> > >> > > > > > > >
> > >> > > > > > > >                 .setName("iuwt-executor").build()
> > >> > > > > > > >
> > >> > > > > > > > The ubuntu-mesos:0.11-17102016-IUWT is a locally hosted
> > >>
> > >> docker
> > >>
> > >> > > > > > > > image.
> > >> > > > > > > > IUWT is
> > >> > > > > > > > the program I'm trying to run, and it runs perfectly
> fine
> > >>
> > >> in the
> > >>
> > >> > > > > > > > aforementioned docker container when running on docker.
> The
> > >> > > > > >
> > >> > > > > > libtiff.so.5
> > >> > > > > >
> > >> > > > > > > > problem only manifests when I'm using mesos'
> containerizer.
> > >> > > > > > > >
> > >> > > > > > > > On Monday, October 17, 2016 6:52:17 AM CEST Avinash
> > >>
> > >> Sridharan
> > >>
> > >> > > wrote:
> > >> > > > > > > > > You are running a container with its own image right?
> So
> > >>
> > >> is
> > >>
> > >> > > > > > > > /usr/lib/x86_64
> > >> > > > > > > >
> > >> > > > > > > > > in the container's file system or the host file
> system?
> > >> > > > > > > > >
> > >> > > > > > > > > On Mon, Oct 17, 2016 at 6:47 AM, Mark Hammons <
> > >> > > > > > > >
> > >> > > > > > > > mark.hamm...@inaf.cnrs-gif.fr
> > >> > > > > > > >
> > >> > > > > > > > > > wrote:
> > >> > > > > > > > > >
> > >> > > > > > > > > > Yes, it's installed under /usr/lib/x86_64 or
> whatever
> > >>
> > >> the
> > >>
> > >> > > > > > > > > > multilib
> > >> > > > > > > >
> > >> > > > > > > > path is
> > >> > > > > > > >
> > >> > > > > > > > > > in
> > >> > > > > > > > > > debian. It seems files under this path are not
> > >>
> > >> accessible.
> > >>
> > >> > > > > > > > > > I added LD_PRELOAD=/usr/lib/libtiff.so.5 to try to
> > >>
> > >> force the
> > >>
> > >> > > > > > symlink
> > >> > > > > >
> > >> > > > > > > > to
> > >> > > > > > > >
> > >> > > > > > > > > > load
> > >> > > > > > > > > > but it refused to load it. I think the mesos
> > >>
> > >> containerizer
> > >>
> > >> > > > > > > > > > is
> > >> > > > > > > >
> > >> > > > > > > > preventing
> > >> > > > > > > >
> > >> > > > > > > > > > the
> > >> > > > > > > > > > program from accessing anything in a directory under
> > >> > >
> > >> > > /usr/lib/
> > >> > >
> > >> > > > > > > > > > for
> > >> > > > > > > > > > some
> > >> > > > > > > > > > reason, as the same program runs fine in the same
> > >>
> > >> container
> > >>
> > >> > > > > > > > > > running
> > >> > > > > > > >
> > >> > > > > > > > under
> > >> > > > > > > >
> > >> > > > > > > > > > docker.
> > >> > > > > > > > > >
> > >> > > > > > > > > > On Monday, October 17, 2016 6:40:49 AM CEST Avinash
> > >> > > > > > > > > > Sridharan
> > >> > > > > >
> > >> > > > > > wrote:
> > >> > > > > > > > > > > Is the library part of the image that you are
> > >> > > > > > > > > > > running?
> > >> > > > > > > > > > > Also
> > >> > > > > > > > > > > you
> > >> > > > > > > > > > > might
> > >> > > > > > > > > >
> > >> > > > > > > > > > need
> > >> > > > > > > > > >
> > >> > > > > > > > > > > to setup LD_LIBRARY_PATH in your env while
> launching
> > >>
> > >> the
> > >>
> > >> > > image
> > >> > >
> > >> > > > > > > > > > > so
> > >> > > > > > > >
> > >> > > > > > > > that
> > >> > > > > > > >
> > >> > > > > > > > > > the
> > >> > > > > > > > > >
> > >> > > > > > > > > > > container process knows where to look for the
> shared
> > >> > >
> > >> > > object.
> > >> > >
> > >> > > > > > > > > > > On Mon, Oct 17, 2016 at 5:21 AM, Mark Hammons <
> > >> > > > > > > > > >
> > >> > > > > > > > > > mark.hamm...@inaf.cnrs-gif.fr
> > >> > > > > > > > > >
> > >> > > > > > > > > > > > wrote:
> > >> > > > > > > > > > > >
> > >> > > > > > > > > > > > Hi all,
> > >> > > > > > > > > > > >
> > >> > > > > > > > > > > > I've been working with the mesos containerizer
> to
> > >>
> > >> handle
> > >>
> > >> > > my
> > >> > >
> > >> > > > > > docker
> > >> > > > > >
> > >> > > > > > > > > > > > containers
> > >> > > > > > > > > > > > recently. I created a docker container that
> > >> > > > > > > > > > > > requires
> > >> > > > > >
> > >> > > > > > libtiff.so.5,
> > >> > > > > >
> > >> > > > > > > > and
> > >> > > > > > > >
> > >> > > > > > > > > > the
> > >> > > > > > > > > >
> > >> > > > > > > > > > > > application within it runs well. But when I try
> to
> > >>
> > >> run
> > >>
> > >> > > > > > > > > > > > it
> > >> > > > > >
> > >> > > > > > within
> > >> > > > > >
> > >> > > > > > > > the
> > >> > > > > > > >
> > >> > > > > > > > > > mesos
> > >> > > > > > > > > >
> > >> > > > > > > > > > > > containerizer I get an error saying libtiff.so.5
> > >>
> > >> doesn't
> > >>
> > >> > > > > > > > > > > > exist.
> > >> > > > > > > > > > > >
> > >> > > > > > > > > > > > The application is being launched via java's
> > >> > > > > > > > > > > > process
> > >> > > > > > > > > > > > mechanism
> > >> > > > > > > > > > > > from
> > >> > > > > > > > > >
> > >> > > > > > > > > > inside
> > >> > > > > > > > > >
> > >> > > > > > > > > > > > a
> > >> > > > > > > > > > > > java thread in a custom java executor if that
> makes
> > >>
> > >> a
> > >>
> > >> > > > > > difference.
> > >> > > > > >
> > >> > > > > > > > > > > > Any idea what could be causing this change in
> > >>
> > >> behavior?
> > >>
> > >> > > As
> > >> > >
> > >> > > > > > > > > > > > you
> > >> > > > > >
> > >> > > > > > can
> > >> > > > > >
> > >> > > > > > > > see
> > >> > > > > > > >
> > >> > > > > > > > > > in
> > >> > > > > > > > > >
> > >> > > > > > > > > > > > the
> > >> > > > > > > > > > > > attached log file, I check /usr/lib, and a
> symbolic
> > >>
> > >> link
> > >>
> > >> > > to
> > >> > >
> > >> > > > > > > > > > > > /usr/lib/x86..../
> > >> > > > > > > > > > > > libtiff.so.5 exists in /usr/lib so the program
> > >>
> > >> should be
> > >>
> > >> > > > > > > > > > > > able
> > >> > > > > >
> > >> > > > > > to
> > >> > > > > >
> > >> > > > > > > > find
> > >> > > > > > > >
> > >> > > > > > > > > > and
> > >> > > > > > > > > >
> > >> > > > > > > > > > > > load
> > >> > > > > > > > > > > > that....
> > >> > > > > > > > > > > > ----
> > >> > > > > > > > > > > > Mark Edgar Hammons II | +33 06 03 69 56 56
> > >> > > > > > > > > >
> > >> > > > > > > > > > --
> > >> > > > > > > > > > ----
> > >> > > > > > > > > > Mark Edgar Hammons II | +33 06 03 69 56 56
> > >> > > > > > > >
> > >> > > > > > > > --
> > >> > > > > > > > ----
> > >> > > > > > > > Mark Edgar Hammons II | +33 06 03 69 56 56
> > >> > > > > >
> > >> > > > > > --
> > >> > > > > > ----
> > >> > > > > > Mark Edgar Hammons II | +33 06 03 69 56 56
> > >> > >
> > >> > > --
> > >> > > ----
> > >> > > Mark Edgar Hammons II | +33 06 03 69 56 56
> > >>
> > >> --
> > >> ----
> > >> Mark Edgar Hammons II | +33 06 03 69 56 56
> > >
> > > --
> > > Avinash Sridharan, Mesosphere
> > > +1 (323) 702 5245
>
>
> --
> ----
> Mark Edgar Hammons II | +33 06 03 69 56 56

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