Ok success I remembered that midgard has issues with using the local host and only works with fully qualified domain names. So I set up apache to to listen on port 8002 and changed the live site to be on port 8002 and now I have the live site being servered through squid. Only for some reason squid just seems to be passing requests straight through so the database is getting hit anyway. Oh well back to the squid.conf file and trying to figure out how to optimise mysql.
The only issue with using non-FQDN comes from old version of the NemeinAuthentication module (which is used in release Aegir), which could not set the required cookie for non-FQDN hosts (actually a PHP problem [too smart for it's own good], there is a workaround in newer versions).
Midgard itself has no issues with non-FQDN hosts.
/Rambo
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