Hi Bharath,

1) Did you sync the spark jar and conf to the worker nodes after build?
2) Since the dataset is not large, could you try local mode first
using `spark-summit --driver-memory 12g --master local[*]`?
3) Try to use less number of partitions, say 5.

If the problem is still there, please attach the full master/worker log files.

Best,
Xiangrui

On Fri, Jul 4, 2014 at 12:16 AM, Bharath Ravi Kumar <reachb...@gmail.com> wrote:
> Xiangrui,
>
> Leaving the frameSize unspecified led to an error message (and failure)
> stating that the task size (~11M) was larger. I hence set it to an
> arbitrarily large value ( I realize 500 was unrealistic & unnecessary in
> this case). I've now set the size to 20M and repeated the runs. The earlier
> runs were on an uncached RDD. Caching the RDD (and setting
> spark.storage.memoryFraction=0.5) resulted in marginal speed up of
> execution, but the end result remained the same. The cached RDD size is as
> follows:
>
> RDD Name    Storage Level                        Cached Partitions
> Fraction Cached    Size in Memory    Size in Tachyon        Size on Disk
> 1084         Memory Deserialized 1x Replicated     80
> 100%         165.9 MB             0.0 B                 0.0 B
>
>
>
> The corresponding master logs were:
>
> 14/07/04 06:29:34 INFO Master: Removing executor app-20140704062238-0033/1
> because it is EXITED
> 14/07/04 06:29:34 INFO Master: Launching executor app-20140704062238-0033/2
> on worker worker-20140630124441-slave1-40182
> 14/07/04 06:29:34 INFO Master: Removing executor app-20140704062238-0033/0
> because it is EXITED
> 14/07/04 06:29:34 INFO Master: Launching executor app-20140704062238-0033/3
> on worker worker-20140630102913-slave2-44735
> 14/07/04 06:29:37 INFO Master: Removing executor app-20140704062238-0033/2
> because it is EXITED
> 14/07/04 06:29:37 INFO Master: Launching executor app-20140704062238-0033/4
> on worker worker-20140630124441-slave1-40182
> 14/07/04 06:29:37 INFO Master: Removing executor app-20140704062238-0033/3
> because it is EXITED
> 14/07/04 06:29:37 INFO Master: Launching executor app-20140704062238-0033/5
> on worker worker-20140630102913-slave2-44735
> 14/07/04 06:29:39 INFO Master: akka.tcp://spark@slave2:45172 got
> disassociated, removing it.
> 14/07/04 06:29:39 INFO Master: Removing app app-20140704062238-0033
> 14/07/04 06:29:39 INFO LocalActorRef: Message
> [akka.remote.transport.ActorTransportAdapter$DisassociateUnderlying] from
> Actor[akka://sparkMaster/deadLetters] to
> Actor[akka://sparkMaster/system/transports/akkaprotocolmanager.tcp0/akkaProtocol-tcp%3A%2F%2FsparkMaster%4010.3.1.135%3A33061-123#1986674260]
> was not delivered. [39] dead letters encountered. This logging can be turned
> off or adjusted with configuration settings 'akka.log-dead-letters' and
> 'akka.log-dead-letters-during-shutdown'.
> 14/07/04 06:29:39 INFO Master: akka.tcp://spark@slave2:45172 got
> disassociated, removing it.
> 14/07/04 06:29:39 INFO Master: akka.tcp://spark@slave2:45172 got
> disassociated, removing it.
> 14/07/04 06:29:39 ERROR EndpointWriter: AssociationError
> [akka.tcp://sparkMaster@master:7077] -> [akka.tcp://spark@slave2:45172]:
> Error [Association failed with [akka.tcp://spark@slave2:45172]] [
> akka.remote.EndpointAssociationException: Association failed with
> [akka.tcp://spark@slave2:45172]
> Caused by:
> akka.remote.transport.netty.NettyTransport$$anonfun$associate$1$$anon$2:
> Connection refused: slave2/10.3.1.135:45172
> ]
> 14/07/04 06:29:39 INFO Master: akka.tcp://spark@slave2:45172 got
> disassociated, removing it.
> 14/07/04 06:29:39 ERROR EndpointWriter: AssociationError
> [akka.tcp://sparkMaster@master:7077] -> [akka.tcp://spark@slave2:45172]:
> Error [Association failed with [akka.tcp://spark@slave2:45172]] [
> akka.remote.EndpointAssociationException: Association failed with
> [akka.tcp://spark@slave2:45172]
> Caused by:
> akka.remote.transport.netty.NettyTransport$$anonfun$associate$1$$anon$2:
> Connection refused: slave2/10.3.1.135:45172
> ]
> 14/07/04 06:29:39 ERROR EndpointWriter: AssociationError
> [akka.tcp://sparkMaster@master:7077] -> [akka.tcp://spark@slave2:45172]:
> Error [Association failed with [akka.tcp://spark@slave2:45172]] [
> akka.remote.EndpointAssociationException: Association failed with
> [akka.tcp://spark@slave2:45172]
> Caused by:
> akka.remote.transport.netty.NettyTransport$$anonfun$associate$1$$anon$2:
> Connection refused: slave2/10.3.1.135:45172
> ]
> 14/07/04 06:29:39 INFO Master: akka.tcp://spark@slave2:45172 got
> disassociated, removing it.
> 14/07/04 06:29:40 WARN Master: Got status update for unknown executor
> app-20140704062238-0033/5
> 14/07/04 06:29:40 WARN Master: Got status update for unknown executor
> app-20140704062238-0033/4
>
>
> Coincidentally, after the initial executor failed, each following executor
> that was re-spawned failed with the following logs:
> (e.g the following was from
> slave1:~/spark-1.0.1-rc1/work/app-20140704062238-0033/2/stderr)
>
> log4j:WARN No appenders could be found for logger
> (org.apache.hadoop.conf.Configuration).
> log4j:WARN Please initialize the log4j system properly.
> log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for
> more info.
> 14/07/04 06:29:35 INFO SparkHadoopUtil: Using Spark's default log4j profile:
> org/apache/spark/log4j-defaults.properties
> 14/07/04 06:29:35 INFO SecurityManager: Changing view acls to: user1
> 14/07/04 06:29:35 INFO SecurityManager: SecurityManager: authentication
> disabled; ui acls disabled; users with view permissions: Set(user1)
> 14/07/04 06:29:35 INFO Slf4jLogger: Slf4jLogger started
> 14/07/04 06:29:35 INFO Remoting: Starting remoting
> 14/07/04 06:29:36 INFO Remoting: Remoting started; listening on addresses
> :[akka.tcp://sparkExecutor@slave1:54782]
> 14/07/04 06:29:36 INFO Remoting: Remoting now listens on addresses:
> [akka.tcp://sparkExecutor@slave1:54782]
> 14/07/04 06:29:36 INFO CoarseGrainedExecutorBackend: Connecting to driver:
> akka.tcp://spark@master:45172/user/CoarseGrainedScheduler
> 14/07/04 06:29:36 INFO WorkerWatcher: Connecting to worker
> akka.tcp://sparkWorker@slave1:40182/user/Worker
> 14/07/04 06:29:36 INFO WorkerWatcher: Successfully connected to
> akka.tcp://sparkWorker@slave1:40182/user/Worker
> 14/07/04 06:29:36 INFO CoarseGrainedExecutorBackend: Successfully registered
> with driver
> 14/07/04 06:29:36 INFO SecurityManager: Changing view acls to: user1
> 14/07/04 06:29:36 INFO SecurityManager: SecurityManager: authentication
> disabled; ui acls disabled; users with view permissions: Set(user1)
> 14/07/04 06:29:36 INFO Slf4jLogger: Slf4jLogger started
> 14/07/04 06:29:36 INFO Remoting: Starting remoting
> 14/07/04 06:29:36 INFO Remoting: Remoting started; listening on addresses
> :[akka.tcp://spark@slave1:39753]
> 14/07/04 06:29:36 INFO SparkEnv: Connecting to MapOutputTracker:
> akka.tcp://spark@master:45172/user/MapOutputTracker
> 14/07/04 06:29:36 INFO SparkEnv: Connecting to BlockManagerMaster:
> akka.tcp://spark@master:45172/user/BlockManagerMaster
> 14/07/04 06:29:36 INFO DiskBlockManager: Created local directory at
> /tmp/spark-local-20140704062936-6123
> 14/07/04 06:29:36 INFO MemoryStore: MemoryStore started with capacity 6.7
> GB.
> 14/07/04 06:29:36 INFO ConnectionManager: Bound socket to port 50960 with id
> = ConnectionManagerId(slave1,50960)
> 14/07/04 06:29:36 INFO BlockManagerMaster: Trying to register BlockManager
> 14/07/04 06:29:36 INFO BlockManagerMaster: Registered BlockManager
> 14/07/04 06:29:36 INFO HttpFileServer: HTTP File server directory is
> /tmp/spark-42c2782f-60f8-45a7-9e11-c789fc87fe2e
> 14/07/04 06:29:36 INFO HttpServer: Starting HTTP Server
> 14/07/04 06:29:36 ERROR CoarseGrainedExecutorBackend: Driver Disassociated
> [akka.tcp://sparkExecutor@slave1:54782] -> [akka.tcp://spark@master:45172]
> disassociated! Shutting down.
>
> In case of the initial executor that successfully started, the corresponding
> log messages (from spark-1.0.1-rc1/work/app-20140704062238-0033/1/stderr) on
> the executor were:
> log4j:WARN No appenders could be found for logger
> (org.apache.hadoop.conf.Configuration).
> log4j:WARN Please initialize the log4j system properly.
> log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for
> more info.
> 14/07/04 06:22:39 INFO SparkHadoopUtil: Using Spark's default log4j profile:
> org/apache/spark/log4j-defaults.properties
> 14/07/04 06:22:39 INFO SecurityManager: Changing view acls to: user1
> 14/07/04 06:22:39 INFO SecurityManager: SecurityManager: authentication
> disabled; ui acls disabled; users with view permissions: Set(user1)
> 14/07/04 06:22:39 INFO Slf4jLogger: Slf4jLogger started
> 14/07/04 06:22:39 INFO Remoting: Starting remoting
> 14/07/04 06:22:39 INFO Remoting: Remoting started; listening on addresses
> :[akka.tcp://sparkExecutor@slave1:50806]
> 14/07/04 06:22:39 INFO Remoting: Remoting now listens on addresses:
> [akka.tcp://sparkExecutor@slave1:50806]
> 14/07/04 06:22:39 INFO CoarseGrainedExecutorBackend: Connecting to driver:
> akka.tcp://spark@master:45172/user/CoarseGrainedScheduler
> 14/07/04 06:22:39 INFO WorkerWatcher: Connecting to worker
> akka.tcp://sparkWorker@slave1:40182/user/Worker
> 14/07/04 06:22:39 INFO WorkerWatcher: Successfully connected to
> akka.tcp://sparkWorker@slave1:40182/user/Worker
> 14/07/04 06:22:40 INFO CoarseGrainedExecutorBackend: Successfully registered
> with driver
> 14/07/04 06:22:40 INFO SecurityManager: Changing view acls to: user1
> 14/07/04 06:22:40 INFO SecurityManager: SecurityManager: authentication
> disabled; ui acls disabled; users with view permissions: Set(user1)
> 14/07/04 06:22:40 INFO Slf4jLogger: Slf4jLogger started
> 14/07/04 06:22:40 INFO Remoting: Starting remoting
> 14/07/04 06:22:40 INFO Remoting: Remoting started; listening on addresses
> :[akka.tcp://spark@slave1:38558]
> 14/07/04 06:22:40 INFO SparkEnv: Connecting to MapOutputTracker:
> akka.tcp://spark@master:45172/user/MapOutputTracker
> 14/07/04 06:22:40 INFO SparkEnv: Connecting to BlockManagerMaster:
> akka.tcp://spark@master:45172/user/BlockManagerMaster
> 14/07/04 06:22:40 INFO DiskBlockManager: Created local directory at
> /tmp/spark-local-20140704062240-6a65
> 14/07/04 06:22:40 INFO MemoryStore: MemoryStore started with capacity 6.7
> GB.
> 14/07/04 06:22:40 INFO ConnectionManager: Bound socket to port 46901 with id
> = ConnectionManagerId(slave1,46901)
> 14/07/04 06:22:40 INFO BlockManagerMaster: Trying to register BlockManager
> 14/07/04 06:22:40 INFO BlockManagerMaster: Registered BlockManager
> 14/07/04 06:22:40 INFO HttpFileServer: HTTP File server directory is
> /tmp/spark-9eba78f9-8ae9-477c-9338-7222ae6fe306
> 14/07/04 06:22:40 INFO HttpServer: Starting HTTP Server
> 14/07/04 06:22:42 INFO CoarseGrainedExecutorBackend: Got assigned task 0
> 14/07/04 06:22:42 INFO Executor: Running task ID 0
> 14/07/04 06:22:42 INFO CoarseGrainedExecutorBackend: Got assigned task 2
> 14/07/04 06:22:42 INFO Executor: Running task ID 2
> ...
>
>
>
> On Fri, Jul 4, 2014 at 5:52 AM, Xiangrui Meng <men...@gmail.com> wrote:
>>
>> The feature dimension is small. You don't need a big akka.frameSize.
>> The default one (10M) should be sufficient. Did you cache the data
>> before calling LRWithSGD? -Xiangrui
>>
>> On Thu, Jul 3, 2014 at 10:02 AM, Bharath Ravi Kumar <reachb...@gmail.com>
>> wrote:
>> > I tried another run after setting the driver memory to 8G (and
>> > spark.akka.frameSize = 500 on the executors and the driver). In
>> > addition, I
>> > also tried to reduce the amount of data that a single task processes, by
>> > increasing the number of partitions (of the labeled points) to 120
>> > (instead
>> > of 2 used earlier), and then setting max cores to 2. That made no
>> > difference
>> > since, at the end of 120 tasks, the familiar error message appeared on a
>> > slave:
>> >
>> > <snipped earlier logs>
>> > 14/07/03 16:18:48 INFO CoarseGrainedExecutorBackend: Got assigned task
>> > 1436
>> > 14/07/03 16:18:48 INFO Executor: Running task ID 1436
>> > 14/07/03 16:18:53 INFO HadoopRDD: Input split:
>> > file:~//2014-05-24-02/part-r-00014:0+2215337
>> > 14/07/03 16:18:54 INFO HadoopRDD: Input split:
>> > file:~//2014-05-24-02/part-r-00014:2215337+2215338
>> > 14/07/03 16:18:54 INFO HadoopRDD: Input split:
>> > file:~//2014-05-24-02/part-r-00003:0+2196429
>> > 14/07/03 16:18:54 INFO HadoopRDD: Input split:
>> > file:~//2014-05-24-02/part-r-00003:2196429+2196430
>> > 14/07/03 16:18:54 INFO HadoopRDD: Input split:
>> > file:~//2014-05-24-02/part-r-00010:0+2186751
>> > 14/07/03 16:18:54 INFO HadoopRDD: Input split:
>> > file:~//2014-05-24-02/part-r-00010:2186751+2186751
>> > 14/07/03 16:18:54 INFO Executor: Serialized size of result for 1436 is
>> > 5958822
>> > 14/07/03 16:18:54 INFO Executor: Sending result for 1436 directly to
>> > driver
>> > 14/07/03 16:18:54 INFO Executor: Finished task ID 1436
>> > 14/07/03 16:18:54 INFO CoarseGrainedExecutorBackend: Got assigned task
>> > 1438
>> > 14/07/03 16:18:54 INFO Executor: Running task ID 1438
>> > 14/07/03 16:19:00 INFO HadoopRDD: Input split:
>> > file:~//2014-05-24-02/part-r-00004:0+2209615
>> > 14/07/03 16:19:00 INFO HadoopRDD: Input split:
>> > file:~//2014-05-24-02/part-r-00004:2209615+2209616
>> > 14/07/03 16:19:00 INFO HadoopRDD: Input split:
>> > file:~//2014-05-24-02/part-r-00011:0+2202240
>> > 14/07/03 16:19:00 INFO HadoopRDD: Input split:
>> > file:~//2014-05-24-02/part-r-00011:2202240+2202240
>> > 14/07/03 16:19:00 INFO HadoopRDD: Input split:
>> > file:~//2014-05-24-02/part-r-00009:0+2194423
>> > 14/07/03 16:19:00 INFO HadoopRDD: Input split:
>> > file:~//2014-05-24-02/part-r-00009:2194423+2194424
>> > 14/07/03 16:19:00 INFO Executor: Serialized size of result for 1438 is
>> > 5958822
>> > 14/07/03 16:19:00 INFO Executor: Sending result for 1438 directly to
>> > driver
>> > 14/07/03 16:19:00 INFO Executor: Finished task ID 1438
>> > 14/07/03 16:19:14 ERROR CoarseGrainedExecutorBackend: Driver
>> > Disassociated
>> > [akka.tcp://sparkExecutor@slave1:51099] ->
>> > [akka.tcp://spark@master:58272]
>> > disassociated! Shutting down.
>> >
>> >
>> > The corresponding master logs were:
>> >
>> > 4/07/03 16:02:14 INFO Master: Registering app LogRegExp
>> > 14/07/03 16:02:14 INFO Master: Registered app LogRegExp with ID
>> > app-20140703160214-0028
>> > 14/07/03 16:02:14 INFO Master: Launching executor
>> > app-20140703160214-0028/1
>> > on worker worker-20140630124441-slave1-40182
>> > 14/07/03 16:19:15 INFO Master: Removing executor
>> > app-20140703160214-0028/1
>> > because it is EXITED
>> > 14/07/03 16:19:15 INFO Master: Launching executor
>> > app-20140703160214-0028/2
>> > on worker worker-20140630124441-slave1-40182
>> > 14/07/03 16:19:15 INFO Master: Removing executor
>> > app-20140703160214-0028/0
>> > because it is EXITED
>> > 14/07/03 16:19:15 INFO Master: Launching executor
>> > app-20140703160214-0028/3
>> > on worker worker-20140630102913-slave2-44735
>> > 14/07/03 16:19:18 INFO Master: Removing executor
>> > app-20140703160214-0028/2
>> > because it is EXITED
>> > 14/07/03 16:19:18 INFO Master: Launching executor
>> > app-20140703160214-0028/4
>> > on worker worker-20140630124441-slave1-40182
>> > 14/07/03 16:19:18 INFO Master: Removing executor
>> > app-20140703160214-0028/3
>> > because it is EXITED
>> > 14/07/03 16:19:18 INFO Master: Launching executor
>> > app-20140703160214-0028/5
>> > on worker worker-20140630102913-slave2-44735
>> > 14/07/03 16:19:20 INFO Master: akka.tcp://spark@master:58272 got
>> > disassociated, removing it.
>> > 14/07/03 16:19:20 INFO Master: Removing app app-20140703160214-0028
>> > 14/07/03 16:19:20 INFO Master: akka.tcp://spark@master:58272 got
>> > disassociated, removing it.
>> >
>> >
>> > Throughout the execution, I confirmed in the UI that driver memory used
>> > was
>> > 0.0 B / 6.9 GB and each executor's memory showed 0.0 B / 12.1 GB even
>> > when
>> > aggregate was being executed. On a related note, I noticed in the
>> > executors
>> > tab that just before the entire job terminated, executors on slave1,
>> > slave2
>> > and the driver "disappeared" momentarily from the active executors list.
>> > The
>> > replacement  executors on slave1 and slave2 were re-spawned a couple of
>> > times and appeared on the executors list again before they too died and
>> > the
>> > job failed.
>> > So it appears that no matter what the task input-result size, the
>> > execution
>> > fails at the end of the stage corresponding to GradientDescent.aggregate
>> > (and the preceding count() in GradientDescent goes through fine). Let me
>> > know if you need any additional information.
>> >
>> >
>> > On Thu, Jul 3, 2014 at 12:27 PM, Xiangrui Meng <men...@gmail.com> wrote:
>> >>
>> >> Could you check the driver memory in the executor tab of the Spark UI
>> >> when the job is running? If it is too small, please set
>> >> --driver-memory with spark-submit, e.g. 10g. Could you also attach the
>> >> master log under spark/logs as well? -Xiangrui
>> >>
>> >> On Wed, Jul 2, 2014 at 9:34 AM, Bharath Ravi Kumar
>> >> <reachb...@gmail.com>
>> >> wrote:
>> >> > Hi Xiangrui,
>> >> >
>> >> > The issue with aggergating/counting over large feature vectors (as
>> >> > part
>> >> > of
>> >> > LogisticRegressionWithSGD) continues to exist, but now in another
>> >> > form:
>> >> > while the execution doesn't freeze (due to SPARK-1112), it now fails
>> >> > at
>> >> > the
>> >> > second or third gradient descent iteration consistently with an error
>> >> > level
>> >> > log message, but no stacktrace. I'm running against 1.0.1-rc1, and
>> >> > have
>> >> > tried setting spark.akka.frameSize as high as 500. When the execution
>> >> > fails,
>> >> > each of the two executors log the following message (corresponding to
>> >> > aggregate at GradientDescent.scala:178) :
>> >> >
>> >> > 14/07/02 14:09:09 INFO
>> >> > BlockFetcherIterator$BasicBlockFetcherIterator:
>> >> > maxBytesInFlight: 50331648, targetRequestSize: 10066329
>> >> > 14/07/02 14:09:09 INFO
>> >> > BlockFetcherIterator$BasicBlockFetcherIterator:
>> >> > Getting 2 non-empty blocks out of 2 blocks
>> >> > 14/07/02 14:09:09 INFO
>> >> > BlockFetcherIterator$BasicBlockFetcherIterator:
>> >> > Started 1 remote fetches in 0 ms
>> >> > 14/07/02 14:09:11 INFO Executor: Serialized size of result for 737 is
>> >> > 5959086
>> >> > 14/07/02 14:09:11 INFO Executor: Sending result for 737 directly to
>> >> > driver
>> >> > 14/07/02 14:09:11 INFO Executor: Finished task ID 737
>> >> > 14/07/02 14:09:18 ERROR CoarseGrainedExecutorBackend: Driver
>> >> > Disassociated
>> >> > [akka.tcp://sparkExecutor@(slave1,slave2):51941] ->
>> >> > [akka.tcp://spark@master:59487] disassociated! Shutting down.
>> >> >
>> >> >
>> >> > There is no separate stacktrace on the driver side.
>> >> >
>> >> > Each input record is of the form p1, p2, (p1,p2) where p1, p2 &
>> >> > (p1,p2)
>> >> > are
>> >> > categorical features with large cardinality, and X is the double
>> >> > label
>> >> > with
>> >> > a continuous value. The categorical variables are converted to binary
>> >> > variables which results in a feature vector of size 741092 (composed
>> >> > of
>> >> > all
>> >> > unique categories across p1, p2 and (p1,p2)). Thus, the labeled point
>> >> > for
>> >> > input record is a sparse vector of size 741092 with only 3 variables
>> >> > set
>> >> > in
>> >> > the record. The total number of records is 683233 after aggregating
>> >> > the
>> >> > input data on (p1, p2). When attempting to train on the unaggregated
>> >> > records
>> >> > (1337907 in number spread across 455 files), the execution fails at
>> >> > count,
>> >> > GradientDescent.scala:161 with the following log
>> >> >
>> >> >
>> >> > (Snipped lines corresponding to other input files)
>> >> > 14/07/02 16:02:03 INFO HadoopRDD: Input split:
>> >> > file:~/part-r-00012:2834590+2834590
>> >> > 14/07/02 16:02:03 INFO HadoopRDD: Input split:
>> >> > file:~/part-r-00005:0+2845559
>> >> > 14/07/02 16:02:03 INFO HadoopRDD: Input split:
>> >> > file:~/part-r-00005:2845559+2845560
>> >> > 14/07/02 16:02:03 INFO Executor: Serialized size of result for 726 is
>> >> > 615
>> >> > 14/07/02 16:02:03 INFO Executor: Sending result for 726 directly to
>> >> > driver
>> >> > 14/07/02 16:02:03 INFO Executor: Finished task ID 726
>> >> > 14/07/02 16:02:12 ERROR CoarseGrainedExecutorBackend: Driver
>> >> > Disassociated
>> >> > [akka.tcp://sparkExecutor@slave1:48423] ->
>> >> > [akka.tcp://spark@master:55792]
>> >> > disassociated! Shutting down.
>> >> >
>> >> > A count() attempted on the input RDD before beginning training has
>> >> > the
>> >> > following metrics:
>> >> >
>> >> >
>> >> > Metric            Min        25th    Median    75th     Max
>> >> >
>> >> > Result
>> >> > serialization
>> >> > time            0 ms    0 ms    0 ms    0 ms    0 ms
>> >> >
>> >> > Duration        33 s    33 s    35 s    35 s    35 s
>> >> >
>> >> > Time spent
>> >> > fetching task
>> >> > results            0 ms    0 ms    0 ms    0 ms    0 ms
>> >> >
>> >> > Scheduler
>> >> > delay            0.1 s    0.1 s    0.3 s    0.3 s    0.3 s
>> >> >
>> >> > Aggregated Metrics by Executor
>> >> >
>> >> > ID     Address Task             Time Total Failed Succeeded Shuffle
>> >> > Read
>> >> > Shuffle Write     Shuf Spill (Mem)     Shuf Spill (Disk)
>> >> > 0     CANNOT FIND ADDRESS     34 s     1     0         1         0.0
>> >> > B
>> >> > 0.0 B             0.0 B                 0.0 B
>> >> > 1     CANNOT FIND ADDRESS     36 s     1     0         1         0.0
>> >> > B
>> >> > 0.0 B             0.0 B                 0.0 B
>> >> >
>> >> > Tasks
>> >> >
>> >> > Task Index    Task ID    Status    Locality Level    Executor
>> >> > Launch
>> >> > Time
>> >> > Duration    GC Time    Result Ser Time    Errors
>> >> > 0     726     SUCCESS         PROCESS_LOCAL     slave1
>> >> > 2014/07/02
>> >> > 16:01:28 35 s         0.1 s
>> >> > 1     727     SUCCESS         PROCESS_LOCAL     slave2
>> >> > 2014/07/02
>> >> > 16:01:28 33 s         99 ms
>> >> >
>> >> > Any pointers / diagnosis please?
>> >> >
>> >> >
>> >> >
>> >> >
>> >> > On Thu, Jun 19, 2014 at 10:03 AM, Bharath Ravi Kumar
>> >> > <reachb...@gmail.com>
>> >> > wrote:
>> >> >>
>> >> >> Thanks. I'll await the fix to re-run my test.
>> >> >>
>> >> >>
>> >> >> On Thu, Jun 19, 2014 at 8:28 AM, Xiangrui Meng <men...@gmail.com>
>> >> >> wrote:
>> >> >>>
>> >> >>> Hi Bharath,
>> >> >>>
>> >> >>> This is related to SPARK-1112, which we already found the root
>> >> >>> cause.
>> >> >>> I will let you know when this is fixed.
>> >> >>>
>> >> >>> Best,
>> >> >>> Xiangrui
>> >> >>>
>> >> >>> On Tue, Jun 17, 2014 at 7:37 PM, Bharath Ravi Kumar
>> >> >>> <reachb...@gmail.com>
>> >> >>> wrote:
>> >> >>> > Couple more points:
>> >> >>> > 1)The inexplicable stalling of execution with large feature sets
>> >> >>> > appears
>> >> >>> > similar to that reported with the news-20 dataset:
>> >> >>> >
>> >> >>> >
>> >> >>> >
>> >> >>> > http://mail-archives.apache.org/mod_mbox/spark-user/201406.mbox/%3c53a03542.1010...@gmail.com%3E
>> >> >>> >
>> >> >>> > 2) The NPE trying to call mapToPair convert an RDD<Long, Long,
>> >> >>> > Integer,
>> >> >>> > Integer> into a JavaPairRDD<Tuple2<Long,Long>,
>> >> >>> > Tuple2<Integer,Integer>>
>> >> >>> > is
>> >> >>> > unrelated to mllib.
>> >> >>> >
>> >> >>> > Thanks,
>> >> >>> > Bharath
>> >> >>> >
>> >> >>> >
>> >> >>> >
>> >> >>> > On Wed, Jun 18, 2014 at 7:14 AM, Bharath Ravi Kumar
>> >> >>> > <reachb...@gmail.com>
>> >> >>> > wrote:
>> >> >>> >>
>> >> >>> >> Hi  Xiangrui ,
>> >> >>> >>
>> >> >>> >> I'm using 1.0.0.
>> >> >>> >>
>> >> >>> >> Thanks,
>> >> >>> >> Bharath
>> >> >>> >>
>> >> >>> >> On 18-Jun-2014 1:43 am, "Xiangrui Meng" <men...@gmail.com>
>> >> >>> >> wrote:
>> >> >>> >>>
>> >> >>> >>> Hi Bharath,
>> >> >>> >>>
>> >> >>> >>> Thanks for posting the details! Which Spark version are you
>> >> >>> >>> using?
>> >> >>> >>>
>> >> >>> >>> Best,
>> >> >>> >>> Xiangrui
>> >> >>> >>>
>> >> >>> >>> On Tue, Jun 17, 2014 at 6:48 AM, Bharath Ravi Kumar
>> >> >>> >>> <reachb...@gmail.com>
>> >> >>> >>> wrote:
>> >> >>> >>> > Hi,
>> >> >>> >>> >
>> >> >>> >>> > (Apologies for the long mail, but it's necessary to provide
>> >> >>> >>> > sufficient
>> >> >>> >>> > details considering the number of issues faced.)
>> >> >>> >>> >
>> >> >>> >>> > I'm running into issues testing LogisticRegressionWithSGD a
>> >> >>> >>> > two
>> >> >>> >>> > node
>> >> >>> >>> > cluster
>> >> >>> >>> > (each node with 24 cores and 16G available to slaves out of
>> >> >>> >>> > 24G
>> >> >>> >>> > on
>> >> >>> >>> > the
>> >> >>> >>> > system). Here's a description of the application:
>> >> >>> >>> >
>> >> >>> >>> > The model is being trained based on categorical features x,
>> >> >>> >>> > y,
>> >> >>> >>> > and
>> >> >>> >>> > (x,y).
>> >> >>> >>> > The categorical features are mapped to binary features by
>> >> >>> >>> > converting
>> >> >>> >>> > each
>> >> >>> >>> > distinct value in the category enum into a binary feature by
>> >> >>> >>> > itself
>> >> >>> >>> > (i.e
>> >> >>> >>> > presence of that value in a record implies corresponding
>> >> >>> >>> > feature
>> >> >>> >>> > =
>> >> >>> >>> > 1,
>> >> >>> >>> > else
>> >> >>> >>> > feature = 0. So, there'd be as many distinct features as enum
>> >> >>> >>> > values) .
>> >> >>> >>> > The
>> >> >>> >>> > training vector is laid out as
>> >> >>> >>> > [x1,x2...xn,y1,y2....yn,(x1,y1),(x2,y2)...(xn,yn)]. Each
>> >> >>> >>> > record
>> >> >>> >>> > in
>> >> >>> >>> > the
>> >> >>> >>> > training data has only one combination (Xk,Yk) and a label
>> >> >>> >>> > appearing in
>> >> >>> >>> > the
>> >> >>> >>> > record. Thus, the corresponding labeledpoint sparse vector
>> >> >>> >>> > would
>> >> >>> >>> > only
>> >> >>> >>> > have 3
>> >> >>> >>> > values Xk, Yk, (Xk,Yk) set for a record. The total length of
>> >> >>> >>> > the
>> >> >>> >>> > vector
>> >> >>> >>> > (though parse) would be nearly 614000.  The number of records
>> >> >>> >>> > is
>> >> >>> >>> > about
>> >> >>> >>> > 1.33
>> >> >>> >>> > million. The records have been coalesced into 20 partitions
>> >> >>> >>> > across
>> >> >>> >>> > two
>> >> >>> >>> > nodes. The input data has not been cached.
>> >> >>> >>> > (NOTE: I do realize the records & features may seem large for
>> >> >>> >>> > a
>> >> >>> >>> > two
>> >> >>> >>> > node
>> >> >>> >>> > setup, but given the memory & cpu, and the fact that I'm
>> >> >>> >>> > willing
>> >> >>> >>> > to
>> >> >>> >>> > give up
>> >> >>> >>> > some turnaround time, I don't see why tasks should
>> >> >>> >>> > inexplicably
>> >> >>> >>> > fail)
>> >> >>> >>> >
>> >> >>> >>> > Additional parameters include:
>> >> >>> >>> >
>> >> >>> >>> > spark.executor.memory = 14G
>> >> >>> >>> > spark.default.parallelism = 1
>> >> >>> >>> > spark.cores.max=20
>> >> >>> >>> > spark.storage.memoryFraction=0.8 //No cache space required
>> >> >>> >>> > (Trying to set spark.akka.frameSize to a larger number, say,
>> >> >>> >>> > 20
>> >> >>> >>> > didn't
>> >> >>> >>> > help
>> >> >>> >>> > either)
>> >> >>> >>> >
>> >> >>> >>> > The model training was initialized as : new
>> >> >>> >>> > LogisticRegressionWithSGD(1,
>> >> >>> >>> > maxIterations, 0.0, 0.05)
>> >> >>> >>> >
>> >> >>> >>> > However, after 4 iterations of gradient descent, the entire
>> >> >>> >>> > execution
>> >> >>> >>> > appeared to stall inexplicably. The corresponding executor
>> >> >>> >>> > details
>> >> >>> >>> > and
>> >> >>> >>> > details of the stalled stage (number 14) are as follows:
>> >> >>> >>> >
>> >> >>> >>> > Metric                        Min        25th     Median
>> >> >>> >>> > 75th
>> >> >>> >>> > Max
>> >> >>> >>> > Result serialization time    12 ms    13 ms    14 ms    16 ms
>> >> >>> >>> > 18
>> >> >>> >>> > ms
>> >> >>> >>> > Duration                    4 s        4 s        5 s
>> >> >>> >>> > 5 s
>> >> >>> >>> > 5 s
>> >> >>> >>> > Time spent fetching task     0 ms    0 ms    0 ms    0 ms
>> >> >>> >>> > 0
>> >> >>> >>> > ms
>> >> >>> >>> > results
>> >> >>> >>> > Scheduler delay                6 s        6 s        6 s
>> >> >>> >>> > 6 s
>> >> >>> >>> > 12 s
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> > Stage Id
>> >> >>> >>> > 14 aggregate at GradientDescent.scala:178
>> >> >>> >>> >
>> >> >>> >>> > Task Index    Task ID    Status    Locality Level
>> >> >>> >>> > Executor
>> >> >>> >>> > Launch Time                Duration    GC     Result Ser Time
>> >> >>> >>> > Errors
>> >> >>> >>> >
>> >> >>> >>> > Time
>> >> >>> >>> >
>> >> >>> >>> > 0     600     RUNNING     PROCESS_LOCAL
>> >> >>> >>> > serious.dataone.foo.bar.com
>> >> >>> >>> > 2014/06/17 10:32:27     1.1 h
>> >> >>> >>> > 1     601     RUNNING     PROCESS_LOCAL
>> >> >>> >>> > casual.dataone.foo.bar.com
>> >> >>> >>> > 2014/06/17 10:32:27         1.1 h
>> >> >>> >>> > 2     602     RUNNING     PROCESS_LOCAL
>> >> >>> >>> > serious.dataone.foo.bar.com
>> >> >>> >>> > 2014/06/17 10:32:27     1.1 h
>> >> >>> >>> > 3     603     RUNNING     PROCESS_LOCAL
>> >> >>> >>> > casual.dataone.foo.bar.com
>> >> >>> >>> > 2014/06/17 10:32:27         1.1 h
>> >> >>> >>> > 4     604     RUNNING     PROCESS_LOCAL
>> >> >>> >>> > serious.dataone.foo.bar.com
>> >> >>> >>> > 2014/06/17 10:32:27     1.1 h
>> >> >>> >>> > 5     605     SUCCESS     PROCESS_LOCAL
>> >> >>> >>> > casual.dataone.foo.bar.com
>> >> >>> >>> > 2014/06/17 10:32:27 4 s     2 s     12 ms
>> >> >>> >>> > 6     606     SUCCESS     PROCESS_LOCAL
>> >> >>> >>> > serious.dataone.foo.bar.com
>> >> >>> >>> > 2014/06/17 10:32:27     4 s     1 s     14 ms
>> >> >>> >>> > 7     607     SUCCESS     PROCESS_LOCAL
>> >> >>> >>> > casual.dataone.foo.bar.com
>> >> >>> >>> > 2014/06/17 10:32:27 4 s     2 s     12 ms
>> >> >>> >>> > 8     608     SUCCESS     PROCESS_LOCAL
>> >> >>> >>> > serious.dataone.foo.bar.com
>> >> >>> >>> > 2014/06/17 10:32:27     5 s     1 s     15 ms
>> >> >>> >>> > 9     609     SUCCESS     PROCESS_LOCAL
>> >> >>> >>> > casual.dataone.foo.bar.com
>> >> >>> >>> > 2014/06/17 10:32:27 5 s     1 s     14 ms
>> >> >>> >>> > 10     610     SUCCESS     PROCESS_LOCAL
>> >> >>> >>> > serious.dataone.foo.bar.com
>> >> >>> >>> > 2014/06/17 10:32:27     5 s     1 s     15 ms
>> >> >>> >>> > 11     611     SUCCESS     PROCESS_LOCAL
>> >> >>> >>> > casual.dataone.foo.bar.com
>> >> >>> >>> > 2014/06/17 10:32:27 4 s     1 s     13 ms
>> >> >>> >>> > 12     612     SUCCESS     PROCESS_LOCAL
>> >> >>> >>> > serious.dataone.foo.bar.com
>> >> >>> >>> > 2014/06/17 10:32:27     5 s     1 s     18 ms
>> >> >>> >>> > 13     613     SUCCESS     PROCESS_LOCAL
>> >> >>> >>> > casual.dataone.foo.bar.com
>> >> >>> >>> > 2014/06/17 10:32:27 5 s     1 s     13 ms
>> >> >>> >>> > 14     614     SUCCESS     PROCESS_LOCAL
>> >> >>> >>> > serious.dataone.foo.bar.com
>> >> >>> >>> > 2014/06/17 10:32:27     4 s     1 s     14 ms
>> >> >>> >>> > 15     615     SUCCESS     PROCESS_LOCAL
>> >> >>> >>> > casual.dataone.foo.bar.com
>> >> >>> >>> > 2014/06/17 10:32:27 4 s     1 s     12 ms
>> >> >>> >>> > 16     616     SUCCESS     PROCESS_LOCAL
>> >> >>> >>> > serious.dataone.foo.bar.com
>> >> >>> >>> > 2014/06/17 10:32:27     5 s     1 s     15 ms
>> >> >>> >>> > 17     617     SUCCESS     PROCESS_LOCAL
>> >> >>> >>> > casual.dataone.foo.bar.com
>> >> >>> >>> > 2014/06/17 10:32:27 5 s     1 s     18 ms
>> >> >>> >>> > 18     618     SUCCESS     PROCESS_LOCAL
>> >> >>> >>> > serious.dataone.foo.bar.com
>> >> >>> >>> > 2014/06/17 10:32:27     5 s     1 s     16 ms
>> >> >>> >>> > 19     619     SUCCESS     PROCESS_LOCAL
>> >> >>> >>> > casual.dataone.foo.bar.com
>> >> >>> >>> > 2014/06/17 10:32:27 4 s     1 s     18 ms
>> >> >>> >>> >
>> >> >>> >>> > Executor stats:
>> >> >>> >>> >
>> >> >>> >>> > RDD Blocks    Memory Used    Disk Used    Active Tasks
>> >> >>> >>> > Failed
>> >> >>> >>> > Tasks
>> >> >>> >>> > Complete Tasks    Total Tasks    Task Time    Shuffle Read
>> >> >>> >>> > Shuffle
>> >> >>> >>> > Write
>> >> >>> >>> > 0     0.0 B / 6.7 GB         0.0 B         2
>> >> >>> >>> > 0
>> >> >>> >>> > 307         309         23.2 m         0.0 B             0.0
>> >> >>> >>> > B
>> >> >>> >>> > 0     0.0 B / 6.7 GB         0.0 B         3
>> >> >>> >>> > 0
>> >> >>> >>> > 308         311         22.4 m         0.0 B             0.0
>> >> >>> >>> > B
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> > Executor jmap output:
>> >> >>> >>> >
>> >> >>> >>> > Server compiler detected.
>> >> >>> >>> > JVM version is 24.55-b03
>> >> >>> >>> >
>> >> >>> >>> > using thread-local object allocation.
>> >> >>> >>> > Parallel GC with 18 thread(s)
>> >> >>> >>> >
>> >> >>> >>> > Heap Configuration:
>> >> >>> >>> >    MinHeapFreeRatio = 40
>> >> >>> >>> >    MaxHeapFreeRatio = 70
>> >> >>> >>> >    MaxHeapSize      = 10737418240 (10240.0MB)
>> >> >>> >>> >    NewSize          = 1310720 (1.25MB)
>> >> >>> >>> >    MaxNewSize       = 17592186044415 MB
>> >> >>> >>> >    OldSize          = 5439488 (5.1875MB)
>> >> >>> >>> >    NewRatio         = 2
>> >> >>> >>> >    SurvivorRatio    = 8
>> >> >>> >>> >    PermSize         = 21757952 (20.75MB)
>> >> >>> >>> >    MaxPermSize      = 134217728 (128.0MB)
>> >> >>> >>> >    G1HeapRegionSize = 0 (0.0MB)
>> >> >>> >>> >
>> >> >>> >>> > Heap Usage:
>> >> >>> >>> > PS Young Generation
>> >> >>> >>> > Eden Space:
>> >> >>> >>> >    capacity = 2783969280 (2655.0MB)
>> >> >>> >>> >    used     = 192583816 (183.66223907470703MB)
>> >> >>> >>> >    free     = 2591385464 (2471.337760925293MB)
>> >> >>> >>> >    6.917598458557704% used
>> >> >>> >>> > From Space:
>> >> >>> >>> >    capacity = 409993216 (391.0MB)
>> >> >>> >>> >    used     = 1179808 (1.125152587890625MB)
>> >> >>> >>> >    free     = 408813408 (389.8748474121094MB)
>> >> >>> >>> >    0.2877628102022059% used
>> >> >>> >>> > To Space:
>> >> >>> >>> >    capacity = 385351680 (367.5MB)
>> >> >>> >>> >    used     = 0 (0.0MB)
>> >> >>> >>> >    free     = 385351680 (367.5MB)
>> >> >>> >>> >    0.0% used
>> >> >>> >>> > PS Old Generation
>> >> >>> >>> >    capacity = 7158628352 (6827.0MB)
>> >> >>> >>> >    used     = 4455093024 (4248.707794189453MB)
>> >> >>> >>> >    free     = 2703535328 (2578.292205810547MB)
>> >> >>> >>> >    62.2338918146983% used
>> >> >>> >>> > PS Perm Generation
>> >> >>> >>> >    capacity = 90701824 (86.5MB)
>> >> >>> >>> >    used     = 45348832 (43.248016357421875MB)
>> >> >>> >>> >    free     = 45352992 (43.251983642578125MB)
>> >> >>> >>> >    49.99770677158598% used
>> >> >>> >>> >
>> >> >>> >>> > 8432 interned Strings occupying 714672 bytes.
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> > Executor GC log snippet:
>> >> >>> >>> >
>> >> >>> >>> > 168.778: [GC [PSYoungGen: 2702831K->578545K(2916864K)]
>> >> >>> >>> > 9302453K->7460857K(9907712K), 0.3193550 secs] [Times:
>> >> >>> >>> > user=5.13
>> >> >>> >>> > sys=0.39,
>> >> >>> >>> > real=0.32 secs]
>> >> >>> >>> > 169.097: [Full GC [PSYoungGen: 578545K->0K(2916864K)]
>> >> >>> >>> > [ParOldGen:
>> >> >>> >>> > 6882312K->1073297K(6990848K)] 7460857K->1073297K(9907712K)
>> >> >>> >>> > [PSPermGen:
>> >> >>> >>> > 44248K->44201K(88576K)], 4.5521090 secs] [Times: user=24.22
>> >> >>> >>> > sys=0.18,
>> >> >>> >>> > real=4.55 secs]
>> >> >>> >>> > 174.207: [GC [PSYoungGen: 2338304K->81315K(2544128K)]
>> >> >>> >>> > 3411653K->1154665K(9534976K), 0.0966280 secs] [Times:
>> >> >>> >>> > user=1.66
>> >> >>> >>> > sys=0.00,
>> >> >>> >>> > real=0.09 secs]
>> >> >>> >>> >
>> >> >>> >>> > I tried to map partitions to cores on the nodes. Increasing
>> >> >>> >>> > the
>> >> >>> >>> > number
>> >> >>> >>> > of
>> >> >>> >>> > partitions (say to 80 or 100) would result in progress till
>> >> >>> >>> > the
>> >> >>> >>> > 6th
>> >> >>> >>> > iteration or so, but the next stage would stall as before
>> >> >>> >>> > with
>> >> >>> >>> > apparent
>> >> >>> >>> > root
>> >> >>> >>> > cause / logs. With increased partitions, the last stage that
>> >> >>> >>> > completed
>> >> >>> >>> > had
>> >> >>> >>> > the following task times:
>> >> >>> >>> >
>> >> >>> >>> > Metric                        Min        25th     Median
>> >> >>> >>> > 75th
>> >> >>> >>> > Max
>> >> >>> >>> > Result serialization time    11 ms    12 ms    13 ms    15 ms
>> >> >>> >>> > 0.4 s
>> >> >>> >>> > Duration                    0.5 s    0.9 s    1 s        3 s
>> >> >>> >>> > 7 s
>> >> >>> >>> > Time spent fetching            0 ms    0 ms    0 ms    0 ms
>> >> >>> >>> > 0
>> >> >>> >>> > ms
>> >> >>> >>> > task results
>> >> >>> >>> > Scheduler delay                5 s        6 s        6 s
>> >> >>> >>> > 7 s
>> >> >>> >>> > 12 s
>> >> >>> >>> >
>> >> >>> >>> > My hypothesis is that as the coefficient array becomes less
>> >> >>> >>> > sparse
>> >> >>> >>> > (with
>> >> >>> >>> > successive iterations), the cost of the aggregate goes up to
>> >> >>> >>> > the
>> >> >>> >>> > point
>> >> >>> >>> > that
>> >> >>> >>> > it stalls (which I failed to explain). Reducing the batch
>> >> >>> >>> > fraction
>> >> >>> >>> > to a
>> >> >>> >>> > very
>> >> >>> >>> > low number like 0.01 saw the iterations progress further, but
>> >> >>> >>> > the
>> >> >>> >>> > model
>> >> >>> >>> > failed to converge in that case after a small number of
>> >> >>> >>> > iterations.
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> > I also tried reducing the number of records by aggregating on
>> >> >>> >>> > (x,y)
>> >> >>> >>> > as
>> >> >>> >>> > the
>> >> >>> >>> > key (i.e. using aggregations instead of training on every raw
>> >> >>> >>> > record),
>> >> >>> >>> > but
>> >> >>> >>> > encountered by the following exception:
>> >> >>> >>> >
>> >> >>> >>> > Loss was due to java.lang.NullPointerException
>> >> >>> >>> > java.lang.NullPointerException
>> >> >>> >>> >         at
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> > org.apache.spark.api.java.JavaPairRDD$$anonfun$pairFunToScalaFun$1.apply(JavaPairRDD.scala:750)
>> >> >>> >>> >         at
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> > org.apache.spark.api.java.JavaPairRDD$$anonfun$pairFunToScalaFun$1.apply(JavaPairRDD.scala:750)
>> >> >>> >>> >         at
>> >> >>> >>> > scala.collection.Iterator$$anon$11.next(Iterator.scala:328)
>> >> >>> >>> >         at
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> > org.apache.spark.Aggregator.combineValuesByKey(Aggregator.scala:59)
>> >> >>> >>> >         at
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> > org.apache.spark.rdd.PairRDDFunctions$$anonfun$1.apply(PairRDDFunctions.scala:96)
>> >> >>> >>> >         at
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> > org.apache.spark.rdd.PairRDDFunctions$$anonfun$1.apply(PairRDDFunctions.scala:95)
>> >> >>> >>> >         at
>> >> >>> >>> > org.apache.spark.rdd.RDD$$anonfun$14.apply(RDD.scala:582)
>> >> >>> >>> >         at
>> >> >>> >>> > org.apache.spark.rdd.RDD$$anonfun$14.apply(RDD.scala:582)
>> >> >>> >>> >         at
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> > org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:35)
>> >> >>> >>> >         at
>> >> >>> >>> >
>> >> >>> >>> > org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:262)
>> >> >>> >>> >         at org.apache.spark.rdd.RDD.iterator(RDD.scala:229)
>> >> >>> >>> >         at
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> > org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:158)
>> >> >>> >>> >         at
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> > org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:99)
>> >> >>> >>> >         at org.apache.spark.scheduler.Task.run(Task.scala:51)
>> >> >>> >>> >         at
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> > org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:187)
>> >> >>> >>> >         at
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
>> >> >>> >>> >         at
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
>> >> >>> >>> >         at java.lang.Thread.run(Thread.java:745)
>> >> >>> >>> >
>> >> >>> >>> >
>> >> >>> >>> > I'd appreciate any insights/comments about what may be
>> >> >>> >>> > causing
>> >> >>> >>> > the
>> >> >>> >>> > execution
>> >> >>> >>> > to stall.
>> >> >>> >>> >
>> >> >>> >>> > If logs/tables appear poorly indented in the email, here's a
>> >> >>> >>> > gist
>> >> >>> >>> > with
>> >> >>> >>> > relevant details:
>> >> >>> >>> > https://gist.github.com/reachbach/a418ab2f01b639b624c1
>> >> >>> >>> >
>> >> >>> >>> > Thanks,
>> >> >>> >>> > Bharath
>> >> >>> >
>> >> >>> >
>> >> >>
>> >> >>
>> >> >
>> >
>> >
>
>

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