Hi ,
We have setup a spark cluster which is on NFS shared storage, there is no
permission issues with NFS storage, all the users are able to write to NFS
storage. When I fired write.df command in SparkR, I am getting below. Can
some one please help me to fix this issue.
16/09/17 08:03:28 ERROR InsertIntoHadoopFsRelationCommand: Aborting job.
java.io.IOException: Failed to rename DeprecatedRawLocalFileStatus
{path=file:/nfspartition/sankar/banking_l1_v2.csv/_
temporary/0/task_201609170802_0013_m_000000/part-r-00000-
46a7f178-2490-444e-9110-510978eaaecb.csv; isDirectory=false;
length=436486316; replication=1; blocksize=33554432;
modification_time=1474099400000;
access_time=0; owner=; group=; permission=rw-rw-rw-; isSymlink=false}
to file:/nfspartition/sankar/banking_l1_v2.csv/part-r-
00000-46a7f178-2490-444e-9110-510978eaaecb.csv
at org.apache.hadoop.mapreduce.lib.output.FileOutputCommitter.mergePaths(
FileOutputCommitter.java:371)
at org.apache.hadoop.mapreduce.lib.output.FileOutputCommitter.mergePaths(
FileOutputCommitter.java:384)
at org.apache.hadoop.mapreduce.lib.output.FileOutputCommitter.commitJob(
FileOutputCommitter.java:326)
at org.apache.spark.sql.execution.datasources.BaseWriterContainer.commitJob(
WriterContainer.scala:222)
at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationComm
and$$anonfun$run$1.apply$mcV$sp(InsertIntoHadoopFsRelationCommand.scala:144)
at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationComm
and$$anonfun$run$1.apply(InsertIntoHadoopFsRelationCommand.scala:115)
at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationComm
and$$anonfun$run$1.apply(InsertIntoHadoopFsRelationCommand.scala:115)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(
SQLExecution.scala:57)
at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationComm
and.run(InsertIntoHadoopFsRelationCommand.scala:115)
at org.apache.spark.sql.execution.command.ExecutedCommandExec.
sideEffectResult$lzycompute(commands.scala:60)
at org.apache.spark.sql.execution.command.ExecutedCommandExec.
sideEffectResult(commands.scala:58)
at org.apache.spark.sql.execution.command.ExecutedCommandExec.doExecute(
commands.scala:74)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$
execute$1.apply(SparkPlan.scala:115)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$
execute$1.apply(SparkPlan.scala:115)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$executeQuery$1.apply(
SparkPlan.scala:136)
at org.apache.spark.rdd.RDDOperationScope$.withScope(
RDDOperationScope.scala:151)
at org.apache.spark.sql.execution.SparkPlan.executeQuery(SparkPlan.scala:
133)
at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:114)
at org.apache.spark.sql.execution.QueryExecution.toRdd$lzycompute(
QueryExecution.scala:86)
at org.apache.spark.sql.execution.QueryExecution.
toRdd(QueryExecution.scala:86)
at org.apache.spark.sql.execution.datasources.DataSource.write(DataSource.
scala:487)
at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:211)
at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:194)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(
NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(
DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.spark.api.r.RBackendHandler.handleMethodCall(
RBackendHandler.scala:141)
at org.apache.spark.api.r.RBackendHandler.channelRead0(
RBackendHandler.scala:86)
at org.apache.spark.api.r.RBackendHandler.channelRead0(
RBackendHandler.scala:38)
at io.netty.channel.SimpleChannelInboundHandler.channelRead(
SimpleChannelInboundHandler.java:105)
at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(
AbstractChannelHandlerContext.java:308)
at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(
AbstractChannelHandlerContext.java:294)
at io.netty.handler.codec.MessageToMessageDecoder.channelRead(
MessageToMessageDecoder.java:103)
at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(
AbstractChannelHandlerContext.java:308)
at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(
AbstractChannelHandlerContext.java:294)
at io.netty.handler.codec.ByteToMessageDecoder.channelRead(
ByteToMessageDecoder.java:244)
at io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(
AbstractChannelHandlerContext.java:308)
at io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(
AbstractChannelHandlerContext.java:294)
at io.netty.channel.DefaultChannelPipeline.fireChannelRead(
DefaultChannelPipeline.java:846)
at io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(
AbstractNioByteChannel.java:131)
at io.netty.channel.nio.NioEventLoop.processSelectedKey(
NioEventLoop.java:511)
at io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(
NioEventLoop.java:468)
at io.netty.channel.nio.NioEventLoop.processSelectedKeys(
NioEventLoop.java:382)
at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:354)
at io.netty.util.concurrent.SingleThreadEventExecutor$2.
run(SingleThreadEventExecutor.java:111)
at io.netty.util.concurrent.DefaultThreadFactory$
DefaultRunnableDecorator.run(DefaultThreadFactory.java:137)
at java.lang.Thread.run(Thread.java:745)
16/09/17 08:03:28 WARN FileUtil: Failed to delete file or dir
[/nfspartition/sankar/banking_l1_v2.csv/_temporary/
0/task_201609170802_0013_m_000000/.part-r-00000-46a7f178-
2490-444e-9110-510978eaaecb.csv.crc]: it still exists.
16/09/17 08:03:28 WARN FileUtil: Failed to delete file or dir
[/nfspartition/sankar/banking_l1_v2.csv/_temporary/
0/task_201609170802_0013_m_000000/part-r-00000-46a7f178-
2490-444e-9110-510978eaaecb.csv]: it still exists.
16/09/17 08:03:28 ERROR DefaultWriterContainer: Job job_201609170803_0000
aborted.
16/09/17 08:03:28 ERROR RBackendHandler: save on 625 failed
Error in invokeJava(isStatic = FALSE, objId$id, methodName, ...) :
org.apache.spark.SparkException: Job aborted.
at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationComm
and$$anonfun$run$1.apply$mcV$sp(InsertIntoHadoopFsRelationCommand.scala:149)
at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationComm
and$$anonfun$run$1.apply(InsertIntoHadoopFsRelationCommand.scala:115)
at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationComm
and$$anonfun$run$1.apply(InsertIntoHadoopFsRelationCommand.scala:115)
at org.apache.spark.sql.execution.SQLExecution$.withNewExecutionId(
SQLExecution.scala:57)
at org.apache.spark.sql.execution.datasources.InsertIntoHadoopFsRelationComm
and.run(InsertIntoHadoopFsRelationCommand.scala:115)
at org.apache.spark.sql.execution.command.ExecutedCommandExec.
sideEffectResult$lzycompute(commands.scala:60)
at org.apache.spark.sql.execution.command.ExecutedCommandExec.
sideEffectResult(commands.scala:58)
at org.apache.spark.sql.execution.command.ExecutedCommandExec.doE
--
Regards
Sankar
