yes, I tried that as well (it is currently registered with Kryo)-
although it doesnt make sense to me (and doesnt solve the problem). I
also made sure my registration was running:
DEBUG org.apache.spark.serializer.KryoSerializer - Running user
registrator: edu.mit.bsense.MyRegistrator
7841 [spark-akka.actor.default-dispatcher-3] DEBUG
org.apache.spark.serializer.KryoSerializer - Running user registrator:
edu.mit.bsense.MyRegistrator
edu.mit.bsense.AnalyticsEngine is the class containing the SC which
instantiates the RDDs and runs the map() and count().
Can you explain why it needs to be serialized?
Also, when running count() on my original RDD (pre map) I get the right answer
- this means the classes of data in the RDD are serializable.
It's only when I run map, and then count() on a new RDD do I get this
exception. My map does not introduce any new classes it - just iterates over
the existing data.
Any ideas?
On 11/3/13 7:43 PM, Patrick Wendell wrote:
edu.mit.bsense.AnalyticsEngine
Look at the exception. Basically, you'll need to register every class
type that is recursively used by BSONObject.
On Sun, Nov 3, 2013 at 4:27 PM, Yadid Ayzenberg <[email protected]> wrote:
Hi Patrick,
I am in fact using Kryo and im registering BSONObject.class (which is class
holding the data) in my KryoRegistrator.
Im not sure what other classes I should be registering.
Thanks,
Yadid
On 11/3/13 7:23 PM, Patrick Wendell wrote:
The problem is you are referencing a class that does not "extend
serializable" in the data that you shuffle. Spark needs to send all
shuffle data over the network, so it needs to know how to serialize
them.
One option is to use Kryo for network serialization as described here
- you'll have to register all the class that get serialized though.
http://spark.incubator.apache.org/docs/latest/tuning.html
Another option is to write a wrapper class that "extends
externalizable" and write the serialization yourself.
- Patrick
On Sun, Nov 3, 2013 at 10:33 AM, Yadid Ayzenberg <[email protected]>
wrote:
Hi All,
My original RDD contains arrays of doubles. when appying a count()
operator
to the original RDD I get the result as expected.
However when I run a map on the original RDD in order to generate a new
RDD
with only the first element of each array, and try to apply count() to
the
new generated RDD I get the following exception:
19829 [run-main] INFO org.apache.spark.scheduler.DAGScheduler - Failed
to
run count at AnalyticsEngine.java:133
[error] (run-main) org.apache.spark.SparkException: Job failed:
java.io.NotSerializableException: edu.mit.bsense.AnalyticsEngine
org.apache.spark.SparkException: Job failed:
java.io.NotSerializableException: edu.mit.bsense.AnalyticsEngine
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:760)
at
org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:758)
at
scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:60)
at
scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:47)
at
org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:758)
at
org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$submitMissingTasks(DAGScheduler.scala:556)
at
org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$submitStage(DAGScheduler.scala:503)
at
org.apache.spark.scheduler.DAGScheduler.processEvent(DAGScheduler.scala:361)
at
org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$run(DAGScheduler.scala:441)
at
org.apache.spark.scheduler.DAGScheduler$$anon$1.run(DAGScheduler.scala:149)
If a run a take() operation on the new RDD I receive the results as
expected. here is my code:
JavaRDD<Double> rdd2 = rdd.flatMap( new FlatMapFunction<Tuple2<Object,
BSONObject>, Double>() {
@Override
public Iterable<Double> call(Tuple2<Object, BSONObject> e) {
BSONObject doc = e._2();
List<List<Double>> vals = (List<List<Double>>)doc.get("data");
List<Double> results = new ArrayList<Double>();
for (int i=0; i< vals.size();i++ )
results.add((Double)vals.get(i).get(0));
return results;
}
});
logger.info("Take: {}", rdd2.take(100));
logger.info("Count: {}", rdd2.count());
Any ideas on what I am doing wrong ?
Thanks,
Yadid
--
Yadid Ayzenberg
Graduate Student and Research Assistant
Affective Computing
Phone: 617-866-7226
Room: E14-274G
MIT Media Lab
75 Amherst st, Cambridge, MA, 02139
--
Yadid Ayzenberg
Graduate Student and Research Assistant
Affective Computing
Phone: 617-866-7226
Room: E14-274G
MIT Media Lab
75 Amherst st, Cambridge, MA, 02139
--
Yadid Ayzenberg
Graduate Student and Research Assistant
Affective Computing
Phone: 617-866-7226
Room: E14-274G
MIT Media Lab
75 Amherst st, Cambridge, MA, 02139
