Hi Jurgen,
I believe that your investigation is going very good direction, the 
MAPREDUCE-1806 in deed do not seem to be ported into Sqoop. Would you mind 
opening a JIRA for that [1]?

Jarcec

Links:
1: https://issues.apache.org/jira/browse/SQOOP

On Mon, Feb 11, 2013 at 09:01:01PM +0000, Jurgen Van Gael wrote:
> Hi, 
> 
> I recently tried to use sqoop to export a Hive table that lives on S3 into my 
> MySQL server (sqoop export --options-file config.txt --table _universe 
> --export-dir s3n://key:secret@mybucket/universe --input-fields-terminated-by 
> '\0001' -m 1 --input-null-string '\\N' --input-null-non-string '\\N'^C). My 
> Sqoop runs on a CDH4 cluster on EC2. I was getting errors such as the 
> following:
> 
> 13/02/11 17:37:15 ERROR security.UserGroupInformation: 
> PriviledgedActionException as:XXX (auth:SIMPLE) 
> cause:java.io.FileNotFoundException: File does not exist: 
> /universe/000000_0.snappy
> 13/02/11 17:37:15 ERROR tool.ExportTool: Encountered IOException running 
> export job: java.io.FileNotFoundException: File does not exist: 
> /universe/000000_0.snappy
> 
> Since the files do exist on S3, I was reminded of getting the same errors 
> when running Hive queries against this table. The reason Hive was failing 
> back then is because of a bug in CombineFileInputFormat when using it against 
> a non-default file system. These issues have since been fixed in Hadoop:
> https://issues.apache.org/jira/browse/MAPREDUCE-1806
> https://issues.apache.org/jira/browse/MAPREDUCE-2704
> 
> 
> I believe Sqoop uses a version of CombineFileInputFormat but as far as I can 
> tell from the latest sources on GIT hasn't incorporated the above fixes. My 
> questions for the user group:
> Am I completely off in my investigations?
> Is there something I am missing in configuring Sqoop for exporting from S3?
> Is there a way for me to bypass the CombineFileInputFormat so I can make my 
> exports work?
> 
> Many thanks,
> 
> Jurgen 
> 

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