Hi Again,
Ok so I didn't exactly resolve the last issue I just put the concepts file into
the UIMA examples folder....as a sort of workaround. I did reset the data path
to the regular expression project in the xml descriptor but it didn't get
picked up during execution.
I executed the Document Analyzer and it became abundantly clear that the issue
I had earlier with the dependencies in Maven was not resolved via quick fix in
Eclipse.
I installed the latest XMLBeans and did a SCOMP to generate the JAR in the
Regular Annotator project from the XMLSchema.xsd and added itto project
classpath. The error I got when trying to execute Document Analyzer was
this:
Caused by: java.lang.ClassNotFoundException:
schemaorg_apache_xmlbeans.system.s4DE0C4BDB0BE7CAF27A97C2453FE4641.TypeSystemHolder
What the program is looking for is this:
path\target\generated-classes\xmlbeans\schemaorg_apache_xmlbeans\system\s4DE0C4BDB0BE7CAF27A97C2453FE4641
but the JAR has a different string of numeric/chars in the last part of the
path. Please see attached for illustration.
Stepping through the code this time didn't help at all.
Would appreciate any assistance on this. I tried generating the JAR file on
all the historical XML Beans XMLSchema.xsd file and some of them were equal to
each other but none of them matched the generation I need:....system\s4DE0C4....
Regards,
Paula
Oh, by the way the last post was actually my first post but not sure why it got
posted so late and out of sequence.
------Complete Java Error ---------------------------
Exception in thread "AWT-EventQueue-0" java.lang.ExceptionInInitializerError
at
org.apache.incubator.uima.regex.ConceptSetDocument$Factory.parse(ConceptSetDocument.java:163)
at
org.apache.uima.annotator.regex.impl.ConceptFileParser_impl.parseConceptFile(ConceptFileParser_impl.java:66)
at
org.apache.uima.annotator.regex.impl.RegExAnnotator.initialize(RegExAnnotator.java:139)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:158)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:354)
at org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484)
at
org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(MainFrame.java:476)
at
org.apache.uima.tools.cvd.control.AnnotatorOpenEventHandler.actionPerformed(AnnotatorOpenEventHandler.java:52)
at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)
at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
at javax.swing.AbstractButton.doClick(Unknown Source)
at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source)
at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Unknown
Source)
at java.awt.Component.processMouseEvent(Unknown Source)
at javax.swing.JComponent.processMouseEvent(Unknown Source)
at java.awt.Component.processEvent(Unknown Source)
at java.awt.Container.processEvent(Unknown Source)
at java.awt.Component.dispatchEventImpl(Unknown Source)
at java.awt.Container.dispatchEventImpl(Unknown Source)
at java.awt.Component.dispatchEvent(Unknown Source)
at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
at java.awt.Container.dispatchEventImpl(Unknown Source)
at java.awt.Window.dispatchEventImpl(Unknown Source)
at java.awt.Component.dispatchEvent(Unknown Source)
at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
at java.awt.EventQueue.access$200(Unknown Source)
at java.awt.EventQueue$3.run(Unknown Source)
at java.awt.EventQueue$3.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown
Source)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown
Source)
at java.awt.EventQueue$4.run(Unknown Source)
at java.awt.EventQueue$4.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown
Source)
at java.awt.EventQueue.dispatchEvent(Unknown Source)
at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
at java.awt.EventDispatchThread.run(Unknown Source)
Caused by: java.lang.RuntimeException: Cannot load SchemaTypeSystem. Unable to
load class with name
schemaorg_apache_xmlbeans.system.s4DE0C4BDB0BE7CAF27A97C2453FE4641.TypeSystemHolder.
Make sure the generated binary files are on the classpath.
at
org.apache.xmlbeans.XmlBeans.typeSystemForClassLoader(XmlBeans.java:783)
at
org.apache.incubator.uima.regex.ConceptSetDocument.<clinit>(ConceptSetDocument.java:20)
... 50 more
Caused by: java.lang.ClassNotFoundException:
schemaorg_apache_xmlbeans.system.s4DE0C4BDB0BE7CAF27A97C2453FE4641.TypeSystemHolder
at java.net.URLClassLoader$1.run(Unknown Source)
at java.net.URLClassLoader$1.run(Unknown Source)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(Unknown Source)
at java.lang.ClassLoader.loadClass(Unknown Source)
at sun.misc.Launcher$AppClassLoader.loadClass(Unknown Source)
at java.lang.ClassLoader.loadClass(Unknown Source)
at
org.apache.xmlbeans.XmlBeans.typeSystemForClassLoader(XmlBeans.java:769)
... 51 more> From: [email protected]
> To: [email protected]
> Subject: RE: Question on Regular Expression Annotator - Current Issue almost
> resolved
> Date: Wed, 30 Oct 2013 00:52:49 -0400
>
> All,
>
> Please disregard previous post. I stepped through the code and see what the
> problem is, the dataPathElements is storing the path to the UIMA examples and
> not the RegExpressionAnnotator project. I should be able to correct it.
>
> Marshall, I do appreciate your help with getting me set up with the correct
> install.
>
> Regards,
> Paula
>
> > From: [email protected]
> > To: [email protected]
> > Subject: RE: Question on Regular Expression Annotator - Previous issue
> > resolved, on to next issue :-)
> > Date: Tue, 29 Oct 2013 22:08:36 -0400
> >
> > Marshall et al,
> >
> > I was able to solve the problem, just applied the quick fixes in eclipse.
> > Apparently it's a common problem with Maven dependency plugin:
> > http://www.journaldev.com/503/how-to-fix-maven-dependency-plugin-goals-copy-dependencies-unpack-is-not-supported-by-m2e-in-eclipse
> >
> > The only problem I have now is executing the regular expression annotator,
> > the concepts file is not being found. I tested the reg expression
> > annotator in the document analyzer tool. I checked and I do see that it's
> > in the resource directory. I've tried specifically typing in the
> > path(resources/concepts.xml) on the parameter settings tab in the
> > descriptor file but the concepts file is just not being picked up.
> >
> > Thanks and appreciate anyone's help on this.
> >
> > Regards,
> > Paula
> >
> >
> > Here's the specific error from below: Caused by:
> > org.apache.uima.annotator.regex.impl.RegexAnnotatorConfigException: "The
> > resource file concepts.xml could not be found."
> >
> > -----the entire
> > error-----------------------------------------org.apache.uima.resource.ResourceInitializationException:
> > Initialization of annotator class
> > "org.apache.uima.annotator.regex.impl.RegExAnnotator" failed. (Descriptor:
> > file:/C:/Users/SemanticPrincess/UIMAWorkspaceJuno/RegularExpressionAnnotator/desc/RegExAnnotator.xml)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:254)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:158)
> > at
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
> > at
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
> > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> > at
> > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
> > at
> > org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:255)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:429)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:373)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:186)
> > at
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
> > at
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
> > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> > at
> > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:354)
> > at
> > org.apache.uima.tools.docanalyzer.DocumentAnalyzer.runProcessingThread(DocumentAnalyzer.java:1223)
> > at
> > org.apache.uima.tools.docanalyzer.DocumentAnalyzer$ProcessingThread.run(DocumentAnalyzer.java:1332)
> > Caused by:
> > org.apache.uima.annotator.regex.impl.RegexAnnotatorConfigException: "The
> > resource file resources/concepts.xml could not be found."
> > at
> > org.apache.uima.annotator.regex.impl.RegExAnnotator.initialize(RegExAnnotator.java:127)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
> > ... 15 more
> > org.apache.uima.resource.ResourceInitializationException: Initialization of
> > annotator class "org.apache.uima.annotator.regex.impl.RegExAnnotator"
> > failed. (Descriptor:
> > file:/C:/Users/SemanticPrincess/UIMAWorkspaceJuno/RegularExpressionAnnotator/desc/RegExAnnotator.xml)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:254)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:158)
> > at
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
> > at
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
> > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> > at
> > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
> > at
> > org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:255)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:429)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:373)
> > at
> > org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:186)
> > at
> > org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
> > at
> > org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
> > at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
> > at
> > org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:354)
> > at
> > org.apache.uima.tools.docanalyzer.DocumentAnalyzer.runProcessingThread(DocumentAnalyzer.java:1223)
> > at
> > org.apache.uima.tools.docanalyzer.DocumentAnalyzer$ProcessingThread.run(DocumentAnalyzer.java:1332)
> > Caused by:
> > org.apache.uima.annotator.regex.impl.RegexAnnotatorConfigException: "The
> > resource file concepts.xml could not be found."
> > at
> > org.apache.uima.annotator.regex.impl.RegExAnnotator.initialize(RegExAnnotator.java:127)
> > at
> > org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
> > ... 15 more
> >
> >
> >
> >
> >
> > From: [email protected]
> > To: [email protected]
> > Subject: FW: Question on Regular Expression Annotator - please disregard
> > previous post this one is correct
> > Date: Tue, 29 Oct 2013 12:42:11 -0400
> >
> >
> >
> >
> >
> >
> >
> >
> > Hi Marshall,
> > First of all thanks for your prompt response. Per your recommendation, I
> > did the tag check out using the link you provided but ran into an error on
> > the maven install with the 'import maven projects' screen please see
> > attached image. There was an error with the
> > 'uima-build-helper-maven-plugin'. I continued with install to resolve
> > later. After installation there was a problem with the POM file. I
> > opened up the POM file, the overview page states an error with the
> > "maven-dependency-plugin(goals "copy-dependencies", "unpack") is not
> > supported by m2e". The second problem (from description section of
> > eclipse project) states that "plugin execution not covered by lifecycle
> > configuration
> > org.apache.uima:uima-build-helper-maven-plugin:2:parse-date-time(execution:
> > setbuildYear and buildMonth, phase:validate)"
> > I do appreciate your personal assistance with this. In the meantime,
> > I'll be reading up on the differences between trunks, tags and branches.
> > :-)
> > Regards,Paula
> > > Date: Tue, 29 Oct 2013 10:15:35 -0400
> > > From: [email protected]
> > > To: [email protected]
> > > Subject: Re: Question on Regular Expression Annotator - please disregard
> > > previous post this one is correct
> > >
> > > Hi,
> > >
> > > It looks like you're working with the "trunk" level of the source.
> > >
> > > The trunk level sometimes doesn't build, as people are working on it...
> > >
> > > If you want to build a "released" level, just check out a tag, rather
> > > than the
> > > trunk. For instance, you could check out of SVN the last release tag,
> > > here:
> > > https://svn.apache.org/repos/asf/uima/addons/tags/uima-addons-2.3.1/RegularExpressionAnnotator
> > >
> > > If you want to work with the trunk, you will need to check out, also, the
> > > project:
> > > uima-addons-parent, and build it using "mvn install". This will create
> > > the
> > > missing 2.3.2-SNAPSHOT version of this artifact in your local Maven .m2
> > > repository, and that will fix the problem of it not being found...
> > >
> > > Cheers. -Marshall
> > >
> > > On 10/28/2013 10:30 PM, digital paula wrote:
> > > > Hi again,
> > > > When I did a maven install via Eclipse it resolved the issues that I
> > > > had in my previous post. The only error that I have now is with the
> > > > build.
> > > > In the POM file there's a problem with this part: <parent>
> > > > <groupId>org.apache.uima</groupId>
> > > > <artifactId>uima-addons-parent</artifactId>
> > > > <version>2.3.2-SNAPSHOT</version>
> > > > <relativePath>../uima-addons-parent</relativePath> </parent> It
> > > > states on the overview tab the following Project build error:
> > > > "Non-resolvable parent POM: could not find artifact org.apac
> > > > Project build error: Non-resolvable parent POM: Could not find artifact
> > > > org.apache.uima:uima-addons-parent:pom:2.3.2-SNAPSHOT and
> > > > 'parent.relativePath' points at wrong local POM
> > > > I did find a similar problem on the user archives that with the parent
> > > > POM but it was for the simple server
> > > > addon:http://mail-archives.apache.org/mod_mbox/uima-user/201206.mbox/browser
> > > > Would appreciate any help on this.
> > > > Thanks.
> > > > Regards,Paula
> > > > From: [email protected]
> > > > To: [email protected]
> > > > Subject: Question on Regular Expression Annotator
> > > > Date: Mon, 28 Oct 2013 12:59:11 -0400
> > > >
> > > >
> > > >
> > > >
> > > > Hi,
> > > >
> > > > I had completed most of the tutorials on UIMA Framework (though I
> > > > wasn't able to do the semantic search due to it not being open source
> > > > anymore and removed from the uimaj-examples folder :-( I came across a
> > > > reference to the Lemur Project while researching alternatives and after
> > > > an evening trying to get it working just ended up scrapping it all
> > > > together. I was able to install the PEAR via the PEAR installation
> > > > tool but when testing it crashed due to unable to resolve references
> > > > to org.ibm.apache that no longer existed so I imported project into
> > > > Eclipse and changed the references in the java file to java.org.apache
> > > > and still ran into problems with the CVD tool, the indriCASconsumer
> > > > descriptor was not finding the java class. I'm going to look into
> > > > Solr next since I see it's a more recent semantic search tool.
> > > >
> > > > In the meantime, I am trying to work with the regular expression
> > > > annotator add on. I had installed the regular expression annotator via
> > > > SVN within Eclipse as a separate project.
> > > > http://svn.apache.org/repos/asf/uima/addons/trunk/RegularExpressionAnnotator/
> > > >
> > > > The problem I had first off was that the reference in each java file
> > > > was 'package org.apache.uima.annotator.regex' but the build path for
> > > > the directories was main.java.org.apache.uima.annotator.regex in the
> > > > project. This was resolved by the quick fix in java to change all the
> > > > package names in the files to have the correct package name of
> > > > main.java.org.apache.uima.annotator.regex.
> > > >
> > > > In addition, I just manually changed the import names such as: 'import
> > > > org.apache.uima.annotator.regex.Position' to
> > > > 'import main.java.org.apache.uima.annotator.regex.Position'
> > > >
> > > > However I ran into a bit of a snag when I came across these to imports
> > > > in the java file ConceptFileParser_Imp.java
> > > > I don't know how to resolve the error (the imports are not resolved)
> > > > since I don't see incubator anywhere in the project and I'm not expert
> > > > enough at Java to resolve the second one:
> > > > import org.apache.incubator.uima.regex.AnnotationDocument;
> > > > import org.apache.xmlbeans.XmlError;
> > > >
> > > > Would appreciate any help.
> > > >
> > > > Thanks.
> > > >
> > > > Regards,
> > > > Paula
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > >
> >
> >
>
