The
org.apache.uima.conceptMapper.support.dictionaryResource.DictionaryResource_impl.class
is in the annotator JAR installed to
/opt/apache-uima/test/ConceptMapper/lib/uima-an-conceptMapper.jar
I believe the issue is that the Document Analyzer application does not have
this JAR on it’s classpath.
I added /opt/apache-uima/test/ConceptMapper/lib/uima-an-conceptMapper.jar to my
CLASSPATH environment variable and was able to successfully run the Document
Analyzer application.
My component metadata/install.xml is the following:
<?xml version="1.0" encoding="UTF-8"?>
<COMPONENT_INSTALLATION_DESCRIPTOR>
<OS>
<NAME>Mac OS X</NAME>
</OS>
<TOOLKITS>
<JDK_VERSION>1.8.0_45</JDK_VERSION>
</TOOLKITS>
<UIMA_FRAMEWORK>
</UIMA_FRAMEWORK>
<SUBMITTED_COMPONENT>
<ID>ConceptMapper</ID>
<NAME></NAME>
<DESC>/opt/apache-uima/test/ConceptMapper/desc/analysis_engine/primitive/ConceptMapperOffsetTokenizer.xml</DESC>
<DEPLOYMENT>standard</DEPLOYMENT>
<SERVICE_COMMAND></SERVICE_COMMAND>
<SERVICE_WORKING_DIR></SERVICE_WORKING_DIR>
<SERVICE_COMMAND_ARGS>
</SERVICE_COMMAND_ARGS>
</SUBMITTED_COMPONENT>
<INSTALLATION>
<PROCESS>
<ACTION>set_env_variable</ACTION>
<PARAMETERS>
<VAR_VALUE>/opt/apache-uima/test/ConceptMapper/lib/uima-an-conceptMapper.jar</VAR_VALUE>
<COMMENTS>component classpath setting</COMMENTS>
<VAR_NAME>classpath</VAR_NAME>
</PARAMETERS>
</PROCESS>
<PROCESS>
<ACTION>set_env_variable</ACTION>
<PARAMETERS>
<VAR_VALUE>/opt/apache-uima/test/ConceptMapper/resources</VAR_VALUE>
<COMMENTS>component uima.datapath
setting</COMMENTS>
<VAR_NAME>uima.datapath</VAR_NAME>
</PARAMETERS>
</PROCESS>
</INSTALLATION>
</COMPONENT_INSTALLATION_DESCRIPTOR>
Stephan Zednik
[email protected]
“Why not change the world?"
> On Dec 2, 2015, at 7:29 AM, Marshall Schor <[email protected]> wrote:
>
> It might be this simple:
>
> The error message says it can't find the resource:
>
> org.apache.uima.conceptMapper.support.dictionaryResource.DictionaryResource_impl
>
> Your Jar dump at the bottom shows the Jar has
>
> DictionaryResource_impl.xml
>
> So, perhaps you need to put this resource in subdirectories so that it's
> found at org.apache... etc., or you maybe could change the xml descriptor
> which specifies where this resource is, eliminating the "org.apache..."
> prefix in front of DictionaryResource_impl.
>
> This is just a shotgun guess - but maybe worth a try.
>
> -Marshall
>
>
> On 11/30/2015 4:40 PM, Stephan Zednik wrote:
>> Hi,
>>
>> I am having trouble running the ConceptMapper annotator via the Document
>> Analyzer application.
>>
>> UIMA version: 2.8.1
>> github fork of UIMA-addons: https://github.com/zednis/uima-addons
>> java: 1.8.0_45
>>
>> I have made slight updates to the add-on annotator pom files so they will
>> successfully build with Java 8.
>>
>> I also updated the imports of the ConceptMapperOffsetTokenizer.xml to be
>> references to XML files in the same directory (see
>> https://github.com/zednis/uima-addons/blob/trunk/ConceptMapper/desc/analysis_engine/primitive/ConceptMapperOffsetTokenizer.xml)
>>
>> I built a PEAR archive of the ConceptMapper annotator using `mvn package`
>> and I used $UIMA_HOME/bin/runPearInstaller.sh to install the ConceptMapper
>> annotator at /opt/apache-uima/test/ConceptMapper.
>>
>> I am attempting to use the ConceptMapper annotator with the Document
>> Analyzer application. I have updated the fileUrl for the dictionary to
>> file:///opt/apache-uima/test/ConceptMapper/resources/dict/testDict.xml in
>> the installed annotator.
>>
>> I have specified the following Analysis Engine descriptor location:
>>
>> /opt/apache-uima/test/ConceptMapper/desc/analysis_engine/primitive/ConceptMapperOffsetTokenizer.xml
>>
>> When I run the document analyzer I get the following stacktrace:
>>
>> $ /opt/apache-uima/bin/documentAnalyzer.sh
>> org.apache.uima.resource.ResourceInitializationException: The class
>> org.apache.uima.conceptMapper.support.dictionaryResource.DictionaryResource_impl
>> could not be found. (Descriptor:
>> file:/opt/apache-uima/test/ConceptMapper/desc/analysis_engine/primitive/ConceptMapperOffsetTokenizer.xml)
>> at
>> org.apache.uima.resource.impl.ResourceManager_impl.registerResource(ResourceManager_impl.java:603)
>> at
>> org.apache.uima.resource.impl.ResourceManager_impl.initializeExternalResources(ResourceManager_impl.java:457)
>> at
>> org.apache.uima.resource.Resource_ImplBase.initialize(Resource_ImplBase.java:193)
>> at
>> org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.initialize(AnalysisEngineImplBase.java:157)
>> at
>> org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:130)
>> at
>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
>> at
>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
>> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:279)
>> at
>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:407)
>> at
>> org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:256)
>> at
>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:429)
>> at
>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:373)
>> at
>> org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:186)
>> at
>> org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
>> at
>> org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
>> at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:279)
>> at
>> org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:371)
>> at
>> org.apache.uima.tools.docanalyzer.DocumentAnalyzer.runProcessingThread(DocumentAnalyzer.java:1223)
>> at
>> org.apache.uima.tools.docanalyzer.DocumentAnalyzer$ProcessingThread.run(DocumentAnalyzer.java:1332)
>> Caused by: java.lang.ClassNotFoundException:
>> org.apache.uima.conceptMapper.support.dictionaryResource.DictionaryResource_impl
>> at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
>> at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
>> at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
>> at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
>> at java.lang.Class.forName0(Native Method)
>> at java.lang.Class.forName(Class.java:264)
>> at
>> org.apache.uima.resource.impl.ResourceManager_impl.registerResource(ResourceManager_impl.java:600)
>> ... 18 more
>>
>> What confuses me about this is that the
>> org.apache.uima.conceptMapper.support.dictionaryResource.DictionaryResource_impl
>> class is in the installed annotator jarfile (uima-an-conceptMapper.jar).
>>
>> $ jar tf /opt/apache-uima/test/ConceptMapper/lib/uima-an-conceptMapper.jar |
>> grep DictionaryResource_impl
>> org/apache/uima/conceptMapper/support/dictionaryResource/CompiledDictionaryResource_impl.class
>> org/apache/uima/conceptMapper/support/dictionaryResource/DictionaryResource_impl$1.class
>> org/apache/uima/conceptMapper/support/dictionaryResource/DictionaryResource_impl$DictEntriesByLength_impl$ReverseOrderIntegerComparator.class
>> org/apache/uima/conceptMapper/support/dictionaryResource/DictionaryResource_impl$DictEntriesByLength_impl.class
>> org/apache/uima/conceptMapper/support/dictionaryResource/DictionaryResource_impl$DictEntriesImpl.class
>> org/apache/uima/conceptMapper/support/dictionaryResource/DictionaryResource_impl$DictEntryImpl.class
>> org/apache/uima/conceptMapper/support/dictionaryResource/DictionaryResource_impl$DictLoader.class
>> org/apache/uima/conceptMapper/support/dictionaryResource/DictionaryResource_impl.class
>>
>> Any ideas why this class would not be found by the document analyzer even
>> though it is in the jar?
>>
>> Thanks,
>>
>> Stephan Zednik
>> [email protected]
>>
>
