Were you using a CasCopier for the generation of this XMI? Cheers,
-- Richard > On 07.05.2016, at 00:30, Pablo N. Mendes <[email protected]> wrote: > > Folks, > I am getting "No sofaFS for specified sofaRef found" while trying to > deserialize an XMI. I found the message a bit cryptic and didn't find much > help on the lazyweb, so I bit the bullet and spent a few hours poking > around. It seems to be a missing "sofa" attribute. If the sofa attribute > has the wrong value, then you get "xmi id <id> is referenced but not > defined" which is very nice and clear. But if you omit the sofa attribute > you get "No sofaFS for specified sofaRef found" which is less informative > IMHO. > > Extra info below. > > Cheers, > Pablo > > $ diff cas1.xmi cas2.xmi > 9c9 > < <ls:DocumentMetadata xmi:id="18" sofa="1" source="file001.txt" > documentId="001"/> > --- >> <ls:DocumentMetadata xmi:id="18" source="file001.txt" documentId="001"/> > > > > > VERSIONS > > <uima.version>2.8.1</uima.version> > <uimafit.version>2.1.0</uimafit.version> > > JAVA CODE SNIPPET > > org.apache.uima.util.XmlCasDeserializer.deserialize(inputStream, > jCas.getCas()); > > STACK TRACE > > Exception in thread "main" org.apache.uima.cas.CASRuntimeException: No > sofaFS for specified sofaRef found. > at org.apache.uima.cas.impl.CASImpl.getSofa(CASImpl.java:806) > at > org.apache.uima.cas.impl.FSIndexRepositoryImpl.ll_addFS_common(FSIndexRepositoryImpl.java:2781) > at > org.apache.uima.cas.impl.FSIndexRepositoryImpl.ll_addFS(FSIndexRepositoryImpl.java:2763) > at > org.apache.uima.cas.impl.FSIndexRepositoryImpl.addFS(FSIndexRepositoryImpl.java:2068) > at > org.apache.uima.cas.impl.XmiCasDeserializer$XmiCasDeserializerHandler.endDocument(XmiCasDeserializer.java:1486) > at > org.apache.uima.util.XmlCasDeserializer$XmlCasDeserializerHandler.endDocument(XmlCasDeserializer.java:127) > at org.apache.xerces.parsers.AbstractSAXParser.endDocument(Unknown Source) > at org.apache.xerces.impl.XMLDocumentScannerImpl.endEntity(Unknown Source) > at org.apache.xerces.impl.XMLEntityManager.endEntity(Unknown Source) > at org.apache.xerces.impl.XMLEntityScanner.load(Unknown Source) > at org.apache.xerces.impl.XMLEntityScanner.skipSpaces(Unknown Source) > at > org.apache.xerces.impl.XMLDocumentScannerImpl$TrailingMiscDispatcher.dispatch(Unknown > Source) > at > org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown > Source) > at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) > at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) > at org.apache.xerces.parsers.XMLParser.parse(Unknown Source) > at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source) > at > org.apache.uima.util.XmlCasDeserializer.deserialize(XmlCasDeserializer.java:83) > at > org.apache.uima.util.XmlCasDeserializer.deserialize(XmlCasDeserializer.java:58) > ... > > > CAS1.xmi > > <?xml version="1.0" encoding="UTF-8"?> > <xmi:XMI > xmlns:cas="http:///uima/cas.ecore"; > xmlns:tcas="http:///uima/tcas.ecore"; > xmlns:xmi="http://www.omg.org/XMI"; > xmlns:ls="http:///com/example.ecore"; > xmi:version="2.0"> > <cas:NULL xmi:id="0"/> > <ls:DocumentMetadata xmi:id="18" sofa="1" source="file001.txt" > documentId="001"/> > <cas:Sofa xmi:id="1" sofaNum="1" sofaID="_InitialView" mimeType="text" > sofaString="This is a test."/> > <cas:View sofa="1" members="18"/> > </xmi:XMI> > > > CAS2.xmi > > <?xml version="1.0" encoding="UTF-8"?> > <xmi:XMI > xmlns:cas="http:///uima/cas.ecore"; > xmlns:tcas="http:///uima/tcas.ecore"; > xmlns:xmi="http://www.omg.org/XMI"; > xmlns:ls="http:///com/example.ecore"; > xmi:version="2.0"> > <cas:NULL xmi:id="0"/> > <ls:DocumentMetadata xmi:id="18" source="file001.txt" documentId="001"/> > <cas:Sofa xmi:id="1" sofaNum="1" sofaID="_InitialView" mimeType="text" > sofaString="This is a test."/> > <cas:View sofa="1" members="18"/> > </xmi:XMI> > > > TYPESYSTEM > > <?xml version="1.0" encoding="UTF-8" ?> > > <typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier";> > <name>ExampleTypeSystem</name> > <description>Just an example</description> > <vendor>example.com</vendor> > <version>1.0</version> > <types> > <typeDescription> > <name>com.example.DocumentMetadata</name> > <description></description> > > <supertypeName>uima.tcas.DocumentAnnotation</supertypeName> > <features> > <featureDescription> > <name>source</name> > <description>Source</description> > > <rangeTypeName>uima.cas.String</rangeTypeName> > </featureDescription> > <featureDescription> > <name>documentId</name> > <description>Source</description> > > <rangeTypeName>uima.cas.String</rangeTypeName> > </featureDescription> > </features> > </typeDescription> > > </types> > </typeSystemDescription> > > > -- > Pablo N. Mendes > http://pablomendes.com
