Hi Peter,
I have the following Ruta (2.6.0) code:
(DEP_ROOT & VERB) {->MARK(BioObject), governor = DEP_ROOT.Governor.ct};
BLOCK(ForEach) Dependency{Dependency.Governor.ct == governor} {
Document{-> LOG("Dep-Type: " + Dependency.DependencyType)};
NSUBJ{->LOG("NSUBJ-Text: " + NSUBJ.ct)};
}
The input ("The fusion protein either directly activates or represses
EWS-FLI1-bound distal regulatory
elements.") is:
<dependency:DET xmi:id="903" sofa="12" begin="0" end="3" Governor="48"
Dependent="24" DependencyType="det" flavor="basic"/>
<dependency:NN xmi:id="911" sofa="12" begin="4" end="10" Governor="48"
Dependent="36" DependencyType="nn" flavor="basic"/>
<dependency:NSUBJ xmi:id="919" sofa="12" begin="11" end="18" Governor="84"
Dependent="48" DependencyType="nsubj" flavor="basic"/>
<dependency:NSUBJ xmi:id="927" sofa="12" begin="11" end="18" Governor="108"
Dependent="48" DependencyType="nsubj" flavor="basic"/>
<dependency:DEP xmi:id="935" sofa="12" begin="19" end="25" Governor="72"
Dependent="60" DependencyType="dep" flavor="basic"/>
<dependency:ADVMOD xmi:id="943" sofa="12" begin="26" end="34" Governor="84"
Dependent="72" DependencyType="advmod" flavor="basic"/>
<dependency:ROOT xmi:id="951" sofa="12" begin="35" end="44" Governor="84"
Dependent="84" DependencyType="root" flavor="basic"/>
<dependency:CONJ xmi:id="959" sofa="12" begin="48" end="57" Governor="84"
Dependent="108" DependencyType="conj_or" flavor="basic"/>
<dependency:AMOD xmi:id="967" sofa="12" begin="58" end="72" Governor="132"
Dependent="120" DependencyType="amod" flavor="basic"/>
<dependency:AMOD xmi:id="975" sofa="12" begin="73" end="79" Governor="156"
Dependent="132" DependencyType="amod" flavor="basic"/>
<dependency:AMOD xmi:id="983" sofa="12" begin="80" end="90" Governor="156"
Dependent="144" DependencyType="amod" flavor="basic"/>
<dependency:DOBJ xmi:id="991" sofa="12" begin="91" end="99" Governor="84"
Dependent="156" DependencyType="dobj" flavor="basic"/>
and the output of the Ruta code:
Dep-Type: nsubj
NSUBJ-Text: protein
NSUBJ-Text: protein
Dep-Type: advmod
Dep-Type: root
Dep-Type: conj_or
Dep-Type: dob
My expectation was (without any match with the second NSUBJ):
Dep-Type: nsubj
NSUBJ-Text: protein
Dep-Type: advmod
Dep-Type: root
Dep-Type: conj_or
Dep-Type: dob
I know there are two NSUBJ annotations but the Governor ("represses ") of the
second NSUBJ is different than the Block condition ("activates "). My
interpretation was that the Block condition (Dependency.Governor.ct ==
governor) doesn't allow for matching with the second NSUBJ. Why am I surprised?
Best Regards,
Reza
