I agree that the env vars and the .pth present a migration path -- and that's a 
good thing I don't intend to disagree with.
 
Freezing of modules:  funny you should mention that.  I recall a somewhat 
undermentioned feature of assemblies being composable from several seperate 
files, referred to as modules.  That's beyond my experience, as well, and I 
imagine depends greatly on how Jim and Martin construct the assembly to begin 
with.
 
Site-Packages:  Global Assembly Cache, I think.  When you install J#, it 
installs J# framework assemblies in such a way that they're accessible from C#. 
 The same I think should be done here.  I can see a tool being created to 
convert a stock Python package into IL and importing it into the GAC.  It's a 
difference in installation, that makes it appropriate for the new platform.
 
Anyway, I'm supposed to be head-down in some gruesome Java, which is neither 
Python nor .NET, so I should shut up for a while and let the sub-Guidos speak.
 

<<winmail.dat>>

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