I meant change it to StringArray Types. Suresh
On Apr 10, 2013, at 1:17 AM, 안신영 <[email protected]> wrote: > Hi Suresh > > You’re right. I used one String with commas for the input of ForEach. > What do you mean that “You should change the inputs bwdFqFile and bwdSaiFile > to String Arrays”? > Do you mean I have to change the definition of web service argument(bwdFqFile > and bwdSaiFile) to StringArray Type? > Or > Do you mean I have to insert not “a comma separated string” but some other > format of “String Arrays” when executing workflow? > I wonder “String Arrays” means a string with space character for separation. > > Shinyoung. > From: Suresh Marru [mailto:[email protected]] > Sent: Wednesday, April 10, 2013 11:11 AM > To: [email protected] > Subject: Re: Question on ForEach > > Hi Shinyoung, > > Couple of things. You are using String and using Foreach, so it is assumed as > one string with comas in it. You should change the inputs bwdFqFile and > bwdSaiFile inputs to String Arrays. > > Suresh > > On Apr 9, 2013, at 4:38 AM, 안신영 <[email protected]> wrote: > > > Hi Suresh. > This is Another questions different from my previous emails. > > I am tring to use ForEach component. > I have register a service ‘bwa_aln_bwd’ which works well when I do not use > ForEach component. > The output type of bwa_aln_bwd is URI type. > > <image001.png> > > Next, I compose a new workflow using ForEach, EndForEach component. > <image002.png> > > When I executed as follows, I gave “/home/team/genome/Demo/sample_1.fq.00, > /home/team/genome/Demo/sample_1.fq.01” as input_3 > and “/home/team/genome/DemoOut/sample_1.fq.00.sai, > /home/team/genome/DemoOut/sample_1.fq.01.sai” as input_4 > > <image003.png> > But Airavata show ‘Error Invoking API’ > > Error messages are > > org.apache.airavata.client.api.AiravataAPIInvocationException: Error invoking > API > at > org.apache.airavata.client.impl.ExecutionManagerImpl.runExperimentGeneral(ExecutionManagerImpl.java:228) > at > org.apache.airavata.client.impl.ExecutionManagerImpl.runExperiment(ExecutionManagerImpl.java:80) > at > org.apache.airavata.xbaya.ui.experiment.WorkflowInterpreterLaunchWindow$3.run(WorkflowInterpreterLaunchWindow.java:322) > Caused by: org.apache.airavata.workflow.model.component.ComponentException: > could not find definition for type > {http://airavata.apache.org/xbaya/Workflow1/xsd/}URIParameterTypeArrayType in > {http://airavata.apache.org/xbaya/Workflow1/}Workflow1 > at > org.apache.airavata.workflow.model.component.ws.WSComponent.parseType(WSComponent.java:468) > at > org.apache.airavata.workflow.model.component.ws.WSComponent.parseMessage(WSComponent.java:398) > at > org.apache.airavata.workflow.model.component.ws.WSComponent.parseOperation(WSComponent.java:369) > at > org.apache.airavata.workflow.model.component.ws.WSComponent.parsePortType(WSComponent.java:353) > at > org.apache.airavata.workflow.model.component.ws.WSComponent.parse(WSComponent.java:345) > at > org.apache.airavata.workflow.model.component.ws.WSComponent.<init>(WSComponent.java:132) > at > org.apache.airavata.workflow.model.component.ws.WSComponentFactory.createComponent(WSComponentFactory.java:136) > at > org.apache.airavata.workflow.model.component.ws.WSComponentFactory.createComponent(WSComponentFactory.java:110) > at org.apache.airavata.workflow.model.wf.Workflow.getInputs(Workflow.java:484) > at > org.apache.airavata.client.impl.ExecutionManagerImpl.getWSComponentPortInputs(ExecutionManagerImpl.java:268) > at > org.apache.airavata.client.impl.ExecutionManagerImpl.runExperimentGeneral(ExecutionManagerImpl.java:185) > ... 2 more > > I expected that ForEach read StringArray, EndForEach wrote URIArray type. > I thought I don’t need to specify URIArray type as application parameter > because ForEach, EndForEach hand Array type. > > Any comment will be beneficial. > Thanks in advance. > > Shinyoung. > From: Suresh Marru [mailto:[email protected]] > Sent: Friday, April 05, 2013 9:19 PM > To: [email protected] > Subject: Re: Another Question on parallel execution! > > Hi Shinyoung, > > Just drop both the applications in parallel and do not connect them. There > can be multiple independent paths in the workflow and Airavata will execute > them in parallel. If you connect the edges (inputs/outputs) then it assumes > data dependency. You can connect the corners on the nodes which will be shown > as dotted lines that will create control dependencies -- that is even if you > do not have data dependency, execute one after another. But your case is > simple, just have them mutually independent. > > Suresh > > On Apr 5, 2013, at 5:00 AM, 안신영 <[email protected]> wrote: > > > > Hi guys! > > Let’s assume that a workflow contains several works(services). Some works are > independent with each other, some works are dependent some other works. > Dependency mean that a work should be executed after another dependent work’s > completion. > In this case, How can I configure some independent work to be executed > simultaneously? > I will run this workflow in HPC cluster. > > Regards, > Shinyoung. >
