Dear Syed,

i switched to Rest Api, now using the url you provided me yesterday it works
fine. Thanks.

Regards,
Francesco

2011/1/17 Syed Haider <[email protected]>

> Dear Francesco,
>
>
>
>
> On 17/01/2011 22:29, Francesco Fazzini wrote:
>
>> Dear all,
>>
>> my name is Francesco, I premise i don't have a deep knowledge of Biomart.
>>
>> I am trying to query Biomart via Java code using HTTP/REST and SOAP ways
>> and I have problems with both:
>>
>> SOAP: i have problem to generate the stub and binding classes with
>> Axis(that's really strange) from Eclipse and Intellj.
>> The Axis version is 1.4.
>> Services used: http://www.ebi.ac.uk/interpro/biomart/martwsdl
>>
>
> Unfortunately the auto wsdl to class generators donot work great, and axis
> is one of those who does not work biomart wsdl. Its not a huge wsdl, it only
> has ~5 service endpoints, so you can parse it directly if you prefer.
>
>
>
>> REST: i am using Apache Http Client library to query Biomart(martview). I
>> get an HTTP 301(Redirect, Moved permanently),so my client doesn't get in the
>> Http response the desired value.
>> Service used: http://www.ebi.ac.uk/interpro/biomart/martview
>>
>
> I see that your URL is not point to the service end-point, it should be
> pointing to martservice e.g:
> http://www.ebi.ac.uk/interpro/biomart/martservice?type=registry
>
> MartView is not a webservice end-point.
>
>
> Best,
> Syed
>
>
>
>> The same client works fine for "martservice", in fact invoking this
>> http://www.biomart.org/biomart/martservice?type=registry  i get back
>> thecorrect result in the response.
>>
>> I hope to have been clear, basically for SOAP i have problem to generate
>> the client from the WSDL and for REST i have that problem with the redirect.
>> Do you have some suggestions? Have you already got this kind of problem?
>> Thanks in advance.
>>
>> Kind regards,
>> Francesco
>>
>>
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