Here you go. Thanks Ros
perl bin/configure.pl --clean -r conf/registryDBPointer.xml Do you want to install in API only mode [y/n] [n]: Checking prerequisites ...[Looks good] rm /home/biomart/db/server_80/biomart-perl/conf/templates/default/*.ttc APACHE: /usr/sbin/httpd HOST: 138.37.210.230 PORT: 80 PROXY: LOCATION: biomart APXS/2: You can change the above configuration by editing "biomart-perl/conf/settings.conf" Got usable Apache in /usr/sbin/httpd, probing for version & ModPerl configuration Have Apache DSO-support and ModPerl library file present, configuring ModPerl in httpd.conf. Libdir /home/biomart/db/server_80/biomart-perl/lib is not in @INC, adding to @INC Connection parameters of [MSD PROTOTYPE (EBI UK)] [ OK ] [NEW CONFIGURATION] .... WITH MEMORY [default] default ... MSD PROTOTYPE (EBI UK) ... 001/001 ... msd ....................................... (RDBMS) martdb.ebi.ac.uk:3306 ......... -> upgrading to 0.6/0.7 ... OK Setting possible links between datasets ....(scanning) 100% ....(linking) 100% ....(sorting) 100% ....(clustering) 1/1 - 0 remain ....(resolving) 100% Building templates for visible datasets .... 100% Compiling templates for visible datasets [1/1] Attribute Panel of Dataset.. :msd [1/1] Filter Panel of Dataset..... :msd On 26/01/2011 12:24, "Syed Haider" <[email protected]> wrote: > Hi Rosalind, > > When you run perl bin/configure.pl -r ... --clean, > > please send us what you see in the console. > > also, your conf/settings.conf > > thanks, > Syed > > > On 26/01/2011 11:29, Rosalind Cutts wrote: >> Hi >> I¹m trying to set up biomart 0.7 on a new server on port 80 that has >> previously been running an apache web server. >> >> Although the index page displays ok, I am getting the following error when >> trying to clicking on the biomart page >> >> ERROR: caught BioMart::Exception::Session: new(): failed: load(): couldn't >> retrieve data: _tie_db_file(): couldn't tie >> '/home/biomart/db/server_80/biomart-perl/conf/sessions/cgisessions.db': >> Inappropriate ioctl for device >> >> If you repeatedly get directed to this error page, there may be a problem >> with your current session parameters. To clear your session and start with a >> clean slate, please click the New button below. >> >> Stacktrace: >> Exception::Class::Base::throw >> /home/biomart/db/server_80/biomart-perl/lib/BioMart/Web.pm:386 >> BioMart::Web::restore_session >> /home/biomart/db/server_80/biomart-perl/lib/BioMart/Web.pm:1443 >> BioMart::Web::handle_request >> /home/biomart/db/server_80/biomart-perl/cgi-bin/martview:100 >> (eval) /home/biomart/db/server_80/biomart-perl/cgi-bin/martview:99 >> ModPerl::ROOT::ModPerl::Registry::home_biomart_db_server_80_biomart_2dperl_cg >> i_2dbin_martview::handler >> /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi/ModPerl/Registry >> Cooker.pm:204 >> (eval) >> /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi/ModPerl/Registry >> Cooker.pm:204 >> ModPerl::RegistryCooker::run >> /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi/ModPerl/Registry >> Cooker.pm:170 >> ModPerl::RegistryCooker::default_handler >> /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi/ModPerl/Registry >> .pm:31 >> ModPerl::Registry::handler -e:0 >> (eval) -e:0 >> >> Any idea what is going on here ? >> >> Thanks >> >> >> Ros Cutts >> Barts Cancer Institute >> >> >> >> >> This email may contain information that is privileged, confidential or >> otherwise protected from disclosure. >> It must not be used by, or its contents copied or disclosed to, persons other >> than the addressee. >> If you have received this email in error please notify the sender immediately >> and delete the email. >> This message has been scanned for viruses. >> >>
settings.conf
Description: settings.conf
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