I have been playing with the release candidate 4 for a day now and really
like the clean design and implementation. After setting up a test local
dataset and a couple of URL datasets, I wanted to try martservice. It may
be in the docs, but I didn't find any detail, I guess. What is the URL for
martservice? Is the release candidate backwards-compatible with calls from
the previous martservice implementations? Perhaps to shortcircuit emails a
bit, I tried localhost:9000/martservice?type=registry, for example, and got
back a stack trace.
Thanks,
Sean
java.lang.NullPointerException
at
org.biomart.api.rest.MartResource.streamResults(MartResource.java:469)
at
org.biomart.api.rest.MartResource.doGetStreamResults(MartResource.java:461)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at
com.sun.jersey.server.impl.model.method.dispatch.AbstractResourceMethodDispatchProvider$TypeOutInvoker._dispatch(AbstractResourceMethodDispatchProvider.java:168)
at
com.sun.jersey.server.impl.model.method.dispatch.ResourceJavaMethodDispatcher.dispatch(ResourceJavaMethodDispatcher.java:70)
at
com.sun.jersey.server.impl.uri.rules.HttpMethodRule.accept(HttpMethodRule.java:279)
at
com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:136)
at
com.sun.jersey.server.impl.uri.rules.ResourceObjectRule.accept(ResourceObjectRule.java:84)
at
com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:136)
at
com.sun.jersey.server.impl.uri.rules.RootResourceClassesRule.accept(RootResourceClassesRule.java:74)
at
com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1357)
at
com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1289)
at
com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1239)
at
com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1229)
at
com.sun.jersey.spi.container.servlet.WebComponent.service(WebComponent.java:420)
at
com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:497)
at
com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:684)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
at
org.mortbay.jetty.servlet.ServletHolder.handle(ServletHolder.java:511)
at
org.mortbay.jetty.servlet.ServletHandler.handle(ServletHandler.java:390)
at
org.mortbay.jetty.security.SecurityHandler.handle(SecurityHandler.java:216)
at
org.mortbay.jetty.servlet.SessionHandler.handle(SessionHandler.java:182)
at
org.mortbay.jetty.handler.ContextHandler.handle(ContextHandler.java:765)
at org.mortbay.jetty.webapp.WebAppContext.handle(WebAppContext.java:418)
at org.mortbay.jetty.servlet.Dispatcher.forward(Dispatcher.java:327)
at org.mortbay.jetty.servlet.Dispatcher.forward(Dispatcher.java:126)
at org.biomart.api.ProxyServlet.doGet(ProxyServlet.java:17)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:689)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
at
org.mortbay.jetty.servlet.ServletHolder.handle(ServletHolder.java:511)
at
org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1166)
at
org.biomart.api.rest.LocationsFilter.doFilter(LocationsFilter.java:28)
at
org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1157)
at org.biomart.api.rest.AuthFilter.doFilter(AuthFilter.java:47)
at
org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1157)
at
org.biomart.api.rest.FlashMessageFilter.doFilter(FlashMessageFilter.java:35)
at
org.mortbay.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1157)
at
org.mortbay.jetty.servlet.ServletHandler.handle(ServletHandler.java:388)
at
org.mortbay.jetty.security.SecurityHandler.handle(SecurityHandler.java:216)
at
org.mortbay.jetty.servlet.SessionHandler.handle(SessionHandler.java:182)
at
org.mortbay.jetty.handler.ContextHandler.handle(ContextHandler.java:765)
at org.mortbay.jetty.webapp.WebAppContext.handle(WebAppContext.java:418)
at
org.mortbay.jetty.handler.HandlerCollection.handle(HandlerCollection.java:114)
at
org.mortbay.jetty.handler.HandlerWrapper.handle(HandlerWrapper.java:152)
at org.mortbay.jetty.Server.handle(Server.java:326)
at
org.mortbay.jetty.HttpConnection.handleRequest(HttpConnection.java:542)
at
org.mortbay.jetty.HttpConnection$RequestHandler.headerComplete(HttpConnection.java:924)
at org.mortbay.jetty.HttpParser.parseNext(HttpParser.java:549)
at org.mortbay.jetty.HttpParser.parseAvailable(HttpParser.java:212)
at org.mortbay.jetty.HttpConnection.handle(HttpConnection.java:404)
at
org.mortbay.io.nio.SelectChannelEndPoint.run(SelectChannelEndPoint.java:409)
at
org.mortbay.thread.QueuedThreadPool$PoolThread.run(QueuedThreadPool.java:582)
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