Hi Yue, You need to clicked on 'msd protein structures' and clicked 'OK'. Sorry for the inconvenience. We will improve the GUI later that the 'OK' button enabled only when some sources are selected.
On 11-02-23 1:57 PM, "Syed Haider" <[email protected]> wrote: > Hi Yue, > > what exactly are you doing in terms of steps, when you add MSD ? > > thanks > Syed > > On 23/02/2011 18:52, Arek Kasprzyk wrote: >> Hi Yue >> #1. The icgc3 config is not part of the central registry yet that is >> available over webservice from biomart.org<http://biomart.org>. For now you >> need to load it directly from a file called icgc3.XML available in the >> registry directory in biomart-java. Jonathan will be adding a dedicated >> section on the icgc deployment in the next rc5 release docs so hopefully this >> should be clear then >> >> #2 I did not experience any issues with msd when testing recently. Perhaps >> someone else could comment on that? >> >> a >> >> >> >> >> On 2011-02-23, at 23:59, "Yue W >> Webster"<[email protected]<mailto:[email protected]>> wrote: >> >> >> Hello Arek, >> >> I am trying to install biomart on a server outside of Lilly firewall and >> seems to get a bit future in the process. However, I am still having >> difficulties and have to bother you again. >> >> Issue #1: After opening ³Add Data Source² window. I couldn¹t see icgc3.xml >> after I scrolled through n the [Marts] list. >> >> <ATT00003..gif> >> >> Issue #2: Not able to find icgi, I tried to add MSD as mentioned in the >> installation document (BioMart 0.8 User Manual, release candidate 4, 1st >> February 2010). But after I clicked on msd proteinstructures and clicked OK, >> I was never prompted to choose a name. Nor was a new config created and shown >> in the right-hand panel. Here is the message from the terminal >> >> Starting MartConfigurator please wait .... >> [Thread-3] ERROR martconfigurator - Trying to connect to: >> msd<http://www.biomart.org:80/biomart/martservice?type=configuration&dataset= >> msd&virtualschema=default> >> http://www.biomart.org:80/biomart/martservice?type=configuration&dataset=msd&; >> virtualschema=default >> ERROR [Thread-3] (Log.java:197) - Trying to connect to: >> msd<http://www.biomart.org:80/biomart/martservice?type=configuration&dataset= >> msd&virtualschema=default> >> http://www.biomart.org:80/biomart/martservice?type=configuration&dataset=msd&; >> virtualschema=default >> [Thread-3] ERROR martconfigurator - Checking exportable >> ERROR [Thread-3] (Log.java:197) - Checking exportable >> [Thread-3] ERROR martconfigurator - Done >> ERROR [Thread-3] (Log.java:197) - Done >> >> <ATT00004..gif> >> >> >> Thanks >> Yue > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
