Hi Jack & Junjun,
Thanks both of you! I see it now.
another favour... is there a chance for me to have the icgc.org
datasummary.txt so I can mimic it for our icgc mart as well?
Thanks,
Jorge
Jack Hsu wrote:
Junjun is right. I just tried it now and you have to be inside the
dist folder if you use a relative path.
It’s a bug and will be fixed in rc5.
-jack
On 11-02-25 10:37 AM, "Junjun Zhang" <[email protected]> wrote:
Please try use the absolute path for the fragment dir:
/home/dcc/sources/release-0_8-candidate_4/dist/conf/fragments
You can use the relative path, but for that to work you have to
start biomart server from the ‘dist’ folder.
Junjun
On 11-02-25 10:33 AM, "Jorge Zamora" <[email protected]> wrote:
Hi Jack
I had that property already enabled but still the right-side
of the page
does come up.
##################################################
# BIOMART APPLICATION SETTINGS
##################################################
biomart.debug = false
biomart.registry.file=/home/dcc/sources/release-0_8-candidate_4/registry/icgc3_20110218.xml
biomart.registry.key.file=/home/dcc/sources/release-0_8-candidate_4/registry/.icgc3_20110218
biomart.fragments.dir = ./conf/fragments
Jorge
Jack Hsu wrote:
> Hi Jorge,
>
> Do you see anything on the right-side of the page? If not you
need to
> edit biomart.properties and set this property:
>
> biomart.fragments.dir = ./conf/fragments
>
> It should already be in there, if that’s the case just
uncomment it.
>
> -jack
>
>
> On 11-02-25 9:40 AM, "Jorge Zamora" <[email protected]> wrote:
>
> Hi Jack,
>
> I've edited the file 'dist/conf/fragments/datasummary.txt' ,
compiled
> and deployed, however I don't see that 'message' displayed on
the web.
>
> is there anywhere in martconfiguartor that makes that file to be
> displayed on the web?
>
> Many thanks.
> Jorge
>
>
> Jack Hsu wrote:
> > Hi Jorge,
> >
> > The file dist/conf/fragments/datasummary.txt is what you’re
> looking for.
> >
> > -jack
> >
> >
> > On 11-02-24 10:49 AM, "Jorge Zamora" <[email protected]> wrote:
> >
> > Hi,
> >
> > I'd like to include the relevant information on our ICGC
mart home
> > page.
> > So far we have the default message:
> >
> > 'Your Data Release Version and Date Here'
> > Dataset Summary
> >
> >
> >
> > How can I update that information and create the Dataset
Summary
> as it
> > is done in http://dcc.icgc.org/ ?
> >
> > Many thanks,
> > Jorge
> >
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