Hi! > All the transformation information is stored in the XML file that > MBuilder (0.7) uses to compile it's DDL for Ensembl core databases. I am not sure if this is related to what you are trying to do, but if you want to create and extend the core Ensembl marts for a BioMart 0.7, then you can also have a look at the following links (both are non-OICR contributions -- so there is no official support from the BioMart team):
* http://bergmanlab.smith.man.ac.uk/?p=35 for creating and extending Ensembl marts manually * https://github.com/joejimbo/MartScript for creating and extending Ensembl marts automatically Now, I could swear that I had some examples for MartScript, but I cannot find them anymore. If you are really after creating an Ensembl mart for a BioMart 0.7 installation, then I can send you the MartScripts that I used to create www.pubmed2ensembl.org. In any case, you need the XML-files from Ensembl as Arek said beforehand. Joachim _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
