Hi Andrea, Although you choose relational mart, you still connect to ensembl source database. You need to change the host to: martdb.ensembl.org and the port to: 5316.
Yong On 11-03-21 7:40 PM, "Andrea Edwards" <[email protected]> wrote: > Hi > > I am using rc5 on ubuntu linux 10.10 > > I'm just working my way through the user manual and I cannot add an > existing relational part (p16/17). After i have selected the relational > mart and selected 'yes' for 'use existing config' the processing status > bar appears for a moment or so but then the list of data sources on the > left is still empty and nothing has been added and the portal window is > still greyed out. > > this is the java error > > com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: Table > 'aedes_aegypti_core_48_1b.meta_template__template__main' doesn't exist > at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native > Method) > at > sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccesso > rImpl.java:57) > at > sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructo > rAccessorImpl.java:45) > at java.lang.reflect.Constructor.newInstance(Constructor.java:532) > at com.mysql.jdbc.Util.handleNewInstance(Util.java:407) > at com.mysql.jdbc.Util.getInstance(Util.java:382) > at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1052) > at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3603) > at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3535) > at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:1989) > at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2150) > at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2620) > at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2570) > at com.mysql.jdbc.StatementImpl.executeQuery(StatementImpl.java:1476) > at > org.biomart.backwardCompatibility.BackwardCompatibility.parseOldTemplates(Back > wardCompatibility.java:105) > at > org.biomart.configurator.controller.ObjectController.createMartFromBC_db(Objec > tController.java:224) > at > org.biomart.configurator.controller.ObjectController.initMarts(ObjectControlle > r.java:152) > at > org.biomart.configurator.controller.ObjectController$1.construct(ObjectControl > ler.java:97) > at org.biomart.common.view.gui.SwingWorker$2.run(SwingWorker.java:128) > at java.lang.Thread.run(Thread.java:636) > [Thread-42] ERROR martconfigurator - Done > ERROR [Thread-42] (Log.java:197) - Done > > thanks a lot > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
