Hi Joachim,
Thanks, this issue is now solved. We are using in-house canned queries
for federation to a different mart which it turns out they had updated
their mart and renamed their datasets, sadly the log files weren't
showing any clues to this effect.
Many thanks,
Nelson
Joachim Baran wrote:
Hi Nelson!
On 11-03-28 8:29 AM, "Nelson Ndegwa" <[email protected]> wrote:
ERROR: caught BioMart::Exception: non-BioMart die(): Can't call method
"getConfigurationTree" on an undefined value at
/automount/nas17b_vol-vol_homes-homes/nndegwa/soft/biomart/biomart-perl/li
b/BioMart/Web.pm
line 786.
Having had a look into the code, it seems that the dataset cannot be
fetched anymore.
Can you please verify whether your BioMart database/tables or
configuration might have changed? Seeing that you are working on a shared
system, someone else might have changed something without your knowledge.
If you are editing configuration files in your home directory on one
machine, but execute the server on a different machine, you should keep in
mind that the NAS might not immediately propagate the filesystem changes
instantly (depending on how the NAS is mounted).
Joachim
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