Hello,
I've realized that in our local ICGC mart we miss the 'platform' menu
when querying for CNSM in the advanced interface.
I made sure I didn't get any errors when generating the script to
generate the secondary data and when running martloader.
Should I expect a 'platform' on this table?
cnv__copy_number_somatic_mutation__dm;
Thanks.
Jorge
mysql> desc cnv__copy_number_somatic_mutation__dm;
+-----------------------------+-----------------+------+-----+---------+-------+
| Field | Type | Null | Key | Default |
Extra |
+-----------------------------+-----------------+------+-----+---------+-------+
| cnv_id_key | int(1) unsigned | YES | MUL | NULL
| |
| mutation_id | varchar(64) | YES | | NULL
| |
| mutation_type | varchar(64) | YES | | NULL
| |
| validation_status | varchar(32) | YES | | NULL
| |
| gene_affected | text | YES | | NULL
| |
| transcript_affected | text | YES | | NULL
| |
| donor_id | varchar(32) | YES | MUL | NULL
| |
| diagnosis_id | varchar(32) | YES | MUL | NULL
| |
| tumour_sample_id | varchar(32) | YES | MUL | NULL
| |
| analysis_id | varchar(32) | YES | MUL | NULL
| |
| biobank_id | varchar(32) | YES | | NULL
| |
| gender | varchar(6) | YES | | NULL
| |
| vital_status | varchar(16) | YES | | NULL
| |
| age_at_diagnosis | int(1) | YES | | NULL
| |
| sample_type | varchar(32) | YES | | NULL
| |
| sample_freezing_method | varchar(32) | YES | | NULL
| |
| percent_intact_tumour_cells | int(1) | YES | | NULL
| |
+-----------------------------+-----------------+------+-----+---------+-------+
17 rows in set (0.00 sec)
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