The exception is different... it seems to be a problem during discovery in openid4java.
org.openid4java.discovery.yadis.YadisException: 0x706: GET failed on https://openid.org/User/all/xrds I'll see if the newer version fixes this, or if anyone using it has a fix for it. -jack On 11-05-24 10:40 AM, "Junjun Zhang" <[email protected]> wrote: Hi Suo, I looked into it, it seems there is no exportable defined for HGNC symbol in Ensembl mart 55. The way to check it is to look for exportable that specifies hgnc symbol as the attribute. Unfortunately no such exportable was found. Junjun On 11-05-19 11:32 PM, "suo" <[email protected]> wrote: >Hi Junjun: > >Got it to work. Thanks for guiding me through. >which one is the exportable defined for HGNC Symbol in Ensembl_55 mart? >I want to link gene names. > >Suo > >--- On Thu, 5/19/11, Junjun Zhang <[email protected]> wrote: > >From: Junjun Zhang <[email protected]> >Subject: Re: [BioMart Users] Problem with Configure links between datasets >To: "suo" <[email protected]>, "[email protected]" ><[email protected]> >Date: Thursday, May 19, 2011, 7:09 PM > >Hi Suo, >In order to federate two datasets, a link needs to be built through an >exportable/importable pair. If you link your dataset with Ensembl, you >can create an importable on your config that can later be paired with an >existing exportable at the Ensembl side. As the tutorial shows, Ensembl >has an exportable called "ensembl_gene_id", you just need to create an >importable in your side. To create it do this: > > >The importable's internalName and linkName on your side must be exactly >the same as shown above. Also, please make sure you do have a filter >called stable_id_1023 exist, otherwise the importable is not valid. >Furthermore, the corresponding database column of the filter: >stable_id_1023 has to contain real Ensembl Gene IDs, otherwise the query >will not return anything. >Follow the tutorial carefully. Once you have your side configured >correctly, you need to prepare a registry file (name it something like >my_mart.xml) look like the follow: > >It includes both your dataset and ensembl dataset. Use this registry to >start biomart server (as follow). > > >If everything configured correctly, from martview after you choose your >own dataset, you should be able to see and click on the second "Dataset" >(as below), from there you can choose ensembl human dataset and pick up >its attributes. > >If I can not see the second "Dataset", it means no link was built to your >dataset. Go back check carefully which part was not done properly. >Hope this helps, >Junjun > > >On 11-05-19 7:50 PM, "suo" <[email protected]> wrote: >Hi, >The one I asked is about the biomart 0.7 I installed not the >biomart.org.Any clue? >--- On Thu, 5/19/11, Joachim Baran <[email protected]> wrote: > From: Joachim Baran <[email protected]> Subject: Re: [BioMart >Users] Problem with Configure links between datasets To: >"[email protected]" <[email protected]> Date: Thursday, May 19, 2011, >4:43 PM Hi! On 11-05-19 7:36 PM, "suo" <[email protected]> wrote: >>How to add the second dataset? From >>http://www.biomart.org/biomart/martview take the following steps: 1. >>Choose Database: ENSEMBL GENES 2. Choose Dataset: Homo sapiens genes >>3. On the left-hand side, click on the lower 'Dataset' (black text, gray >>background) 4. Choose Additional Dataset: REACTOME pathway 5. Click >>on 'Results' Hope that solves the problem. Best Wishes, Joachim >>_______________________________________________ Users mailing list >>[email protected] https://lists.biomart.org/mailman/listinfo/users >>_______________________________________________Users mailing >>[email protected]https://lists.biomart.org/mailman/listinfo/users > > _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
_______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
