Hello, My name is Joni Fazo and I am trying to trouble shoot an error on our Biomart configuration for http://phytozome.net.
Our issue is that the sequence data for some transcripts are split into multiple entries when all CDS for a given genome is requested. If the user requests the CDS for the individual transcripts, the sequence is presented by one entry. Listed below is an example of the FASTA headers for one such transcript (AT1G31930.2): Split entries (generated when all CDS for the genome is requested from Biomart): >11466849;11465832|11466986;11466755|AT1G31930|AT1G31930.2 >11468117;11467266;11467524;11468367;11467780;11467074|11468289;11467445;11467698;11468961;11468036;11467178|AT1G31930|AT1G31930.2 Single entry (generated when just CDS for AT1G31930.2 is requested from Biomart): >11468117;11467266;11467524;11468367;11467780;11466849;11467074;11465832|11468289;11467445;11467698;11468961;11468036;11466986;11467178;11466755|AT1G31930|AT1G31930.2 Has anyone encountered this issue or something similar? Best regards, Joni Fazo Joint Genome Institute / Lawrence Berkeley National Lab http://www.phytozome.net
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