Hi Naharajan
There is an issue with the registry file which I will report to our
web team and we will fix this as soon as possible. Basically, if you
look here:
http://apr2011.archive.ensembl.org/biomart/martservice?type=registry
you will see that host="archive.ensembl.org" but this should be
host="apr2011.archive.ensembl.org".
Apologies for any inconvenience caused.
Regards
Rhoda
On 15 Jul 2011, at 12:37, Naharajan Lakshmanaperumal wrote:
Hello,
I was trying to retreive gene related information for zebra fish
using the archive site "apr2011- Ensembl version 62".
When I tried to connect to the archive site using R biomart package.
I get the following error
> fish_mart <- useMart("ENSEMBL_MART_ENSEMBL", dataset
="drerio_gene_ensembl", host = "apr2011.archive.ensembl.org", path =
"/biomart/martservice", archive = FALSE)
Error in useDataset(mart = mart, dataset = dataset, verbose =
verbose) :
The given dataset: drerio_gene_ensembl , is not valid. Correct
dataset names can be obtained with the listDatasets function.
The datasets are missing for the Ensembl genes 62 version.
Thanks in advance for your help,
Naharajan
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Rhoda Kinsella Ph.D.
Ensembl Bioinformatician,
European Bioinformatics Institute (EMBL-EBI),
Wellcome Trust Genome Campus,
Hinxton
Cambridge CB10 1SD,
UK.
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