Hi Victor, I just tried the following query at http://www.biomart.org/biomart/martview/:
<?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE Query> <Query virtualSchemaName = "default" formatter = "TSV" header = "0" uniqueRows = "0" count = "" datasetConfigVersion = "0.6" > <Dataset name = "hsapiens_gene_ensembl" interface = "default" > <Filter name = "ensembl_peptide_id" value = "ENSP00000282074,ENSP00000393322,ENSP00000397517,ENSP00000216271"/> <Attribute name = "ensembl_gene_id" /> <Attribute name = "ensembl_transcript_id" /> <Attribute name = "mim_gene_accession" /> <Attribute name = "mim_gene_description" /> <Attribute name = "ensembl_peptide_id" /> </Dataset> </Query> And I got the following result: Ensembl Gene ID,Ensembl Transcript ID,MIM Gene Accession,MIM Gene Description,Ensembl Protein ID ENSG00000100429,ENST00000216271,608544,,ENSP00000216271 ENSG00000152253,ENST00000282074,609395,,ENSP00000282074 ENSG00000152253,ENST00000451987,609395,,ENSP00000393322 ENSG00000100429,ENST00000415993,608544,,ENSP00000397517 Is that what similar to what you are trying to get? Junjun On 11-07-18 4:52 PM, "Victor Lundin" <[email protected]> wrote: Hi all, I can't seem to get any OMIM data out of a BioMart search filtered by a short list of Ensembl Protein IDs. Any suggestions? Victor
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