Hi Shin, Yes I was able to reproduce this issue with getting 5'UTR sequences. However, after restating our servers, it seems that the query is working now. Please give it a try, and let us know if you are still experiencing problems.
FASTA output option is displayed when you get the query results/preview, but not while the query is still running. I hope it helps. Elena Rivkin Outreach and Training Coordinator, Informatics and Bio-computing Ontario Institute for Cancer Research MaRS Centre, South Tower 101 College Street, Suite 800 Toronto, Ontario, Canada M5G 0A3 Tel: 647-258-4316 Toll-free: 1-866-678-6427 www.oicr.on.ca This message and any attachments may contain confidential and/or privileged information for the sole use of the intended recipient. Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. If you have received this message in error, please contact the sender and delete all copies. Opinions, conclusions or other information contained in this message may not be that of the organization. On 11-07-27 9:51 AM, "Arek Kasprzyk" <[email protected]> wrote: >Hi Shin, >the best place to report such problems is [email protected] where i am >forwarding your email. Someone there will be able to help you > >a > > >On Wed, Jul 27, 2011 at 9:48 AM, Shinichiro Wachi ><[email protected]> wrote: >>Dear Arek, >> >> >> >> >> >>I would like to let you know that server is having a difficult time >>responding to the following query: >> >> >> >>http://www.biomart.org/biomart/martview?VIRTUALSCHEMANAME=default&ATTRIBU >>TES=hsapiens_gene_ensembl.default.sequences.ensembl_gene_id|hsapiens_gene >>_ensembl.default.sequences.ensembl_transcript_id|hsapiens_gene_ensembl.de >>fault.sequences.5utr|hsapiens_gene_ensembl.default.sequences.5_utr_start| >>hsapiens_gene_ensembl.default.sequences.5_utr_end|hsapiens_gene_ensembl.d >>efault.sequences.external_gene_id|hsapiens_gene_ensembl.default.sequences >>.chromosome_name|hsapiens_gene_ensembl.default.sequences.start_position|h >>sapiens_gene_ensembl.default.sequences.end_position&FILTERS=&VISIBLEPANEL >>=resultspanel >> >> >> >>The symptoms are: >> >> >> >>1) preview of the data will not show up (the circular pattern will keep >>cycling) , >> >>2) the text nor download of the result will not show up >> >>3) Fasta output option will not appear (TSV is the only option in the >>drop-down menu), and >> >>4) email reply seems to indicate MySQL server failure (the response from >>server is attached below) >> >> >> >>Other mirrors (West and East US coast Emsembl, as well as European site) >>seems to have similar problems. Please let me know if this is a problem >>that >>can be fixed, and if you know of a good solution. >> >> >> >>Thank you very much! >> >> >> >> >> >>Shin Wachi >> >> _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
