Hi everyone, In the longer term all publically available sources, including ICGC portal will be available through the central service.
a On Mon, Aug 1, 2011 at 12:22 PM, Steffen Durinck <[email protected]> wrote: > Hi Zhining, > > By default, biomaRt queries the central BioMart server. ICGC is not hosted > there. > If you know the host of the ICGC web service URL you could use that directy > to establish your connection through biomaRt. > e.g. Ensembl can be queried through the central BioMart service but also by > doing: > listMarts(host="may2009.archive.ensembl.org") > mart=useMart("ENSEMBL_MART_ENSEMBL",dataset='hsapiens_gene_ensembl', > host="may2009.archive.ensembl.org") > > Cheers, > Steffen > > On Mon, Aug 1, 2011 at 6:05 AM, Wang, Zhining (NIH/NCI) [C] > <[email protected]> wrote: >> >> Hi, >> >> >> >> I am playing with the R package, BiomaRt. I tried >> >> >> >> library("biomaRt"); >> >> listMarts(); >> >> >> >> >> >> It returned 66 Mart, but I can not find the Mart for ICGC which is powered >> by BioMart (http://dcc.icgc.org/). Can you help? >> >> >> >> Thanks, >> >> >> >> Zhining >> >> >> >> >> >> >> >> Zhining Wang, Ph. D. >> >> Senior Scientist, Bioinformatics >> >> SRA International, Inc. >> >> Contractor, TCGA program office, NCI/NIH >> >> Bethesda, Maryland >> >> Building31A, room 3A20 >> >> Tel: 301-435-0680 >> >> Email: [email protected] >> >> >> >> _______________________________________________ >> Users mailing list >> [email protected] >> https://lists.biomart.org/mailman/listinfo/users >> > > > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users > > _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
