In some cases, MartConfigurator is unable to access the information about what host a URL should point to. This is because of a shortcoming in the way the information is shared from 0.7, and there is no workaround. In these cases MartConfigurator simply uses the host to which it is connecting, in this case www.biomart.org<http://www.biomart.org>. However, in this case the link should be pointing to www.ensembl.org<http://www.ensembl.org>. In order to fix it you'll have to change the host manually. Depending on what version of BioMart you're using, there might be a single pseudoattribute called "External URL prefix" that you can edit to change all of the URLs; in older versions, you might need to change each URL manually.
Jonathan Guberman, PhD Application Programmer Ontario Institute for Cancer Research MaRS Centre, South Tower 101 College Street, Suite 800 Toronto, Ontario, Canada M5G 0A3 Tel: 647-260-7818 Toll-free: 1-866-678-6427 www.oicr.on.ca<http://www.oicr.on.ca> On 2011-08-04, at 7:22 AM, Isaac cano wrote: Dear BioMart users, I've imported the Ensembl Genes mart (from the biomart repository) into my configuration and when I click for example on the Ensembl Gene Id to go to the Ensembl report I'm linked to a Not Found web page. For example, the Ensembl gene Id ENSG00000000003 is linked to http://www.biomart.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000000003 but I get the following 404 error: Not Found The requested URL /Homo_sapiens/Gene/Summary was not found on this server. Do you also have this problem? Thanks, -- Isaac Cano Bioinformatics Linkcare Health Services SL C/Villarroel 170 08036 - Barcelona Tel.: (+34)932 275 400, ext. 4182\4523 Mobile: (+34) 666 186 748 Fax: (+34) 932 275 455 [email protected]<mailto:[email protected]> <ATT00002..txt>
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