Hi Rebecca,
thats odd, i can get results from webservice but martview is not working
inspite attribtues being selected. Could you please delete the logs
files under biomart-perl/logs/ and restart the server ?
Best,
Syed
On 07/10/2011 13:02, Rebecca Ewing wrote:
Hi Syed
It is on a vm and is visible outside the sanger:
http://www.sanger.ac.uk/genetics/CGP/cosmic/biomart/martview/
Thanks
Rebecca
On 7 Oct 2011, at 12:35, Syed Haider wrote:
Rebecca,
could you please provide a bit more information. Where is your Biomart running
? is it accessible from outside sanger ?
Best,
Syed
On 07/10/2011 10:41, Rebecca Ewing wrote:
Hi
Our BioMart is not working properly. It is up and running but will not get any
results. It is not producing any error messages when I hit the results button
but if I try to export the results I get the following:
ERROR: caught BioMart::Exception::Query: You need to define virtual schema name
in order to create a Query object
If you repeatedly get directed to this error page, there may be a problem with
your current session parameters. To clear your session and start with a clean
slate, please click the New button below.
Stacktrace:
Exception::Class::Base::throw /www/test/biomart-perl/lib/BioMart/Query.pm:93
BioMart::Query::_new /www/test/biomart-perl/lib/BioMart/RootI.pm:64
BioMart::RootI::new /www/test/biomart-perl/lib/BioMart/Web.pm:1968
BioMart::Web::handle_request /www/test/biomart-perl/cgi-bin/martview:107
(eval) /www/test/biomart-perl/cgi-bin/martview:106
ModPerl::ROOT::ModPerl::Registry::www_test_biomart_2dperl_cgi_2dbin_martview::handler
/usr/lib/perl5/ModPerl/RegistryCooker.pm:204
(eval) /usr/lib/perl5/ModPerl/RegistryCooker.pm:204
ModPerl::RegistryCooker::run /usr/lib/perl5/ModPerl/RegistryCooker.pm:170
ModPerl::RegistryCooker::default_handler /usr/lib/perl5/ModPerl/Registry.pm:31
ModPerl::Registry::handler -e:0
(eval) -e:0
Does anyone have any idea what the problem may be.
Thanks
Rebecca
-- The Wellcome Trust Sanger Institute is operated by Genome Research Limited,
a charity registered in England with number 1021457 and a company registered in
England with number 2742969, whose registered office is 215 Euston Road,
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