Hi Isaac, BioMart only supports proxy settings that is built into Java networking. (http://download.oracle.com/javase/6/docs/technotes/guides/net/proxies.html)
It may be the case here that the default Java settings are not enough to use the SOCKS proxy server. We currently don't have a way to support proxy settings beyond through JVM system properties. -jack From: Isaac cano <[email protected]<mailto:[email protected]>> Date: Tue, 11 Oct 2011 04:53:48 -0400 To: BioMart Users <[email protected]<mailto:[email protected]>> Subject: [BioMart Users] OpenID -- Error 400 - Bad request Dear BioMart users, I'm running BioMart 0.8 RC6 in a server that is connected to Internet through a proxy/socks server. I've configured the biomart.all.properties xml file with the corresponding proxy/socks setting and every connection from/to our BioMart server to other marts like Ensembl is working but the OpenID functionality is not. I receive the following error messages to the error log file: 2011-10-11 10:58:49,908 WARN [31538514@qtp-31278839-8:RealmVerifier.java:107]: RP discovery / realm validation disabled; 2011-10-11 10:58:49,912 INFO [31538514@qtp-31278839-8:ConsumerManager.java:286]: Associations disabled. 2011-10-11 10:58:49,912 WARN [31538514@qtp-31278839-8:RealmVerifier.java:107]: RP discovery / realm validation disabled; 2011-10-11 10:58:49,918 INFO [31538514@qtp-31278839-8:Discovery.java:128]: Starting discovery on URL identifier: https://www.google.com/accounts/o8/id 2011-10-11 10:58:50,023 INFO [31538514@qtp-31278839-8:HttpMethodDirector.java:438]: I/O exception (java.net.SocketException) caught when processing request: Can't connect to SOCKS proxy:Connection refused And the corresponding message that is shown in the biomart portal (openID pop-up) is the following: <html> <head> <meta http-equiv="Content-Type" content="text/html; charset=ISO-8859-1"/> <title>Error 400 Bad Request</title> </head> <body><h2>HTTP ERROR 400</h2> <p>Problem accessing /martservice/user/auth. Reason: <pre> Bad Request</pre></p><hr /><i><small>Powered by Jetty://</small></i><br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/> <br/> </body> </html> Is the OpendID functionality supported in the current release when using proxy/socks servers? Thanks in advance, -- Isaac Cano Bioinformatics Linkcare Health Services SL C/Villarroel 170 08036 - Barcelona Tel.: (+34)932 275 400, ext. 4182\4523 Mobile: (+34) 666 186 748 Fax: (+34) 932 275 455 [email protected]<mailto:[email protected]>
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