Hi Rhoda and thank you,
When I put these elements in my registry file and use the standard perl
code given by martview, I get the following error :
Dataset default.btaurus_gene_ensembl not found in registry
I try to extract gene names from given regions.
What should I replace default with?
Cheers
Christophe
Le 12/10/2011 15:12, Rhoda Kinsella a écrit :
Hi Christophe
You can access the archived marts at martdb.ensembl.org. Connection
details are here:
http://www.ensembl.org/info/data/mysql.html
Regards
Rhoda
On 12 Oct 2011, at 13:58, Christophe Klopp wrote:
Hi Syed,
If I choose lets' say Ensembl 62: Apr 2011
<http://Apr2011.archive.ensembl.org/> and go to the corresponding
biomart http://apr2011.archive.ensembl.org/biomart/martview where do
I find the URL:port ?
Cheers
Christophe
Le 12/10/2011 14:07, Syed Haider a écrit :
Hi Christophe,
Follow this link below and then choose the version you prefer, then
go to Biomart link and you will see the URL:port
http://www.ensembl.org/Help/ArchiveList
Best,
Syed
On 12/10/2011 13:03, Christophe Klopp wrote:
Hi,
Which host and port have I to use to query the Ensembl archive mart
databases using the API?
Cheers
Christophe
--
====================================================================
= Christophe KLOPP BIA INRA Toulouse 31326 Castanet-Tolosan =
= Tel: 33 5 61 28 50 36 Email:[email protected] =
=http://www.sigenae.org/ =
=http://bioinfo.genotoul.fr/ =
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_______________________________________________
Users mailing list
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Rhoda Kinsella Ph.D.
Ensembl Production Project Leader,
European Bioinformatics Institute (EMBL-EBI),
Wellcome Trust Genome Campus,
Hinxton
Cambridge CB10 1SD,
UK.
--
====================================================================
= Christophe KLOPP BIA INRA Toulouse 31326 Castanet-Tolosan =
= Tel: 33 5 61 28 50 36 Email: [email protected] =
= http://www.sigenae.org/ =
= http://bioinfo.genotoul.fr/ =
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