Hi Stephen, It seems like Ensembl mart maybe misconfigured. I am cc'ing your email to the users mailing list so someone from Ensembl will be able to help you
a On Wed, Oct 26, 2011 at 5:24 PM, Turner, Stephen (sdt5z) <[email protected] > wrote: > Arek,**** > > ** ** > > Not sure who I should be sending this to. I was trying to use Biomart to > convert RefSeq transcript IDs to ensembl gene ids / names, and I have this > error whenever I filter results using RefSeq mRNA ids. It looks like it > isn’t able to query the ensembl to refseq table or something. Let me know > who I should contact about this.**** > > ** ** > > Thakns,**** > > ** ** > > Stephen**** > > ** ** > > ** ** > > View rows as Unique results only**** > > Serious Error: Error during query execution: Table > 'ensembl_mart_64.ox_RefSeq_mRNA__dm' doesn't exist**** > > ** ** > > ERROR: caught BioMart::Exception::Database: Error during query execution: > Table 'ensembl_mart_64.ox_RefSeq_mRNA__dm' doesn't exist**** > > ** ** > > If you repeatedly get directed to this error page, there may be a problem > with your current session parameters. To clear your session and start with a > clean slate, please click the New button below.**** > > ** ** > > Stacktrace:**** > > Exception::Class::Base::throw /srv/biomart_server/ > biomart.org/biomart-perl/lib/BioMart/Dataset/TableSet.pm:241**** > > BioMart::Dataset::TableSet::_fillAttributeTableWith /srv/biomart_server/ > biomart.org/biomart-perl/lib/BioMart/Dataset/TableSet.pm:124**** > > BioMart::Dataset::TableSet::_getResultTable /srv/biomart_server/ > biomart.org/biomart-perl/lib/BioMart/DatasetI.pm:1170**** > > BioMart::DatasetI::getResultTable /srv/biomart_server/ > biomart.org/biomart-perl/lib/BioMart/QueryRunner.pm:472**** > > BioMart::QueryRunner::_processPath /srv/biomart_server/ > biomart.org/biomart-perl/lib/BioMart/QueryRunner.pm:374**** > > BioMart::QueryRunner::_getResultTable /srv/biomart_server/ > biomart.org/biomart-perl/lib/BioMart/QueryRunner.pm:194**** > > BioMart::QueryRunner::execute /srv/biomart_server/ > biomart.org/biomart-perl/lib/BioMart/Web.pm:2433**** > > (eval) /srv/biomart_server/ > biomart.org/biomart-perl/lib/BioMart/Web.pm:2201**** > > BioMart::Web::handle_request /srv/biomart_server/ > biomart.org/biomart-perl/cgi-bin/martview:96**** > > (eval) /srv/biomart_server/biomart.org/biomart-perl/cgi-bin/martview:95*** > * > > ModPerl::ROOT::ModPerl::Registry::srv_biomart_server_biomart_2eorg_biomart_2dperl_cgi_2dbin_martview::handler > /usr/lib/perl5/ModPerl/RegistryCooker.pm:204**** > > (eval) /usr/lib/perl5/ModPerl/RegistryCooker.pm:204**** > > ModPerl::RegistryCooker::run /usr/lib/perl5/ModPerl/RegistryCooker.pm:170* > *** > > ModPerl::RegistryCooker::default_handler > /usr/lib/perl5/ModPerl/Registry.pm:31**** > > ModPerl::Registry::handler -e:0**** > > (eval) -e:0**** > > ** ** > > ----------------------------------**** > > Stephen Turner, Ph.D.**** > > Bioinformatics Core Director**** > > Department of Public Health Sciences**** > > University of Virginia School of Medicine**** > > ** ** >
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