Hi Reza, We need more information about the problem. What's the output when you ran configure.pl? What modules were reported missing? Can you share the biomart.pl script? I am cc'ing this to the BioMart user group mailing list so that others may be able to help.
Best regards, Junjun From: hamidreza semnani <[email protected]<mailto:[email protected]>> Reply-To: hamidreza semnani <[email protected]<mailto:[email protected]>> Date: Fri, 28 Oct 2011 06:44:22 -0400 To: jzhang <[email protected]<mailto:[email protected]>> Subject: question about Biomart? Hi, I saw your email address in web page and I hope you can answer my question about Biomart. I tried to install biomart-perl and followed the way in user guide. Run "perl bin/configure.pl -r conf/martURLLocation.xml" and tried to install modules from cPAN, but when I wanted to run Biomart from command line I saw this error: Can't locate BioMart/Initializer.pm in @INC (@INC contains: /etc/perl /usr/local/lib/perl/5.10.1 /usr/local/share/perl/5.10.1 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .) at /home/reza/Desktop/biomart.pl line 4. BEGIN failed--compilation aborted at /home/reza/Desktop/biomart.pl line 4. By the way I try to install these modules manually : BioMart::Initializer BioMart::Query BioMart::QueryRunner but it is not possible. How can overcome this problem? Thanks. Sincerely, reza
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