Hi Chris,
The strand needs to be set to either 1 or -1. I hope that helps.
Regards
Rhoda
On 15 Dec 2011, at 15:48, Buxton Chris (NORTH BRISTOL NHS TRUST) wrote:
Hi,
I am have a little difficulty adding the filter criteria to the
variation dataset in Biomart to get variation records for a set of
genomic coordinates.
Under the “Multiple Chromosomal Regions (Chr:Start:End:Strand)”
part, could someone please clarify the format of the filter as I
cant get it to find any SNPs
<image003.jpg>
Also, what is the difference between Homo sapiens Structural
variation and Homo sapiens variation.
My assumption is that variation is single nucleotide polymorphisms,
and structural variation is indels?
Any clarification would be helpful
<image004.jpg>
Thanks,
Chris
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Rhoda Kinsella Ph.D.
Ensembl Production Project Leader,
European Bioinformatics Institute (EMBL-EBI),
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