Dear JunJun, After a long long time trying martconfigurator to open the central portal registry file I've got an out of memory error: GC overhead limit exceed.
Is this really that I should increase the system's physical RAM memory of maybe the Java heap??!! Thanks! Isaac 2011/12/22 Isaac cano <[email protected]> > Dear JunJun, > > I'm trying to open the CentralPortal.xml registry file but > martconfigurator is not able to open it. I get no logs so just command line > output that first says something regarding password encryption (see > password.png screenshot attached) and then some other outputs (see > martconfigurator_output.txt attached). > > I'm using proxy server so I've set it properly and I've tried to open the > icgc7.xml registry file and it worked. Any idea why I cannot get opened the > CentralPortal.xml registry file??! > > Thanks!! > > Isaac > > > 2011/12/21 Junjun Zhang <[email protected]> > >> The CentralPortal registry file is at: >> https://code.oicr.on.ca/svn/biomart/biomart-java/branches/release-0_8-candidate_7/registry/ >> Junjun >> >> From: Isaac cano <[email protected]> >> Date: Wed, 21 Dec 2011 13:08:16 -0500 >> To: Arek Kasprzyk <[email protected]> >> Cc: "[email protected]" <[email protected]>, jzhang < >> [email protected]>, BioMart Users <[email protected]> >> Subject: Re: [BioMart Users] BioMart Central Portal >> >> Thanks a lot Arek, I'll check the registry directory first. >> I have to say that Nuria is now in another professional situation but I >> think she continues being interested. >> Thanks, >> Isaac >> El 21/12/2011 18:46, "Arek Kasprzyk" <[email protected]> escribió: >> >>> Hi Isaac, >>> yes it is possible. The config should be available from the 'registry' >>> directory in rc6 but if not Junjun Zhang (cc'ed on this email) will be able >>> to make this configuraiton available to you. I believe that Nuria (cc'ed on >>> this email) is also interested in this config. >>> a >>> >>> On Wed, Dec 21, 2011 at 11:26 AM, Isaac cano <[email protected]> wrote: >>> >>>> Dear BioMart users, >>>> >>>> I've recently known about the BioMart Central Portal and I was >>>> wondering if it is available as a mart so we can import the complete >>>> central portal as a source into martconfigurator. Is this possible?! >>>> >>>> Thanks, >>>> >>>> -- >>>> Isaac Cano >>>> Bioinformatics >>>> Linkcare Health Services SL >>>> C/Villarroel 170 >>>> 08036 - Barcelona >>>> Tel.: (+34)932 275 400, ext. 4182\4523 >>>> Mobile: (+34) 666 186 748 >>>> Fax: (+34) 932 275 455 >>>> [email protected] >>>> >>>> >>>> _______________________________________________ >>>> Users mailing list >>>> [email protected] >>>> https://lists.biomart.org/mailman/listinfo/users >>>> >>>> >>> > > > -- > Isaac Cano > Bioinformatics > Linkcare Health Services SL > C/Villarroel 170 > 08036 - Barcelona > Tel.: (+34)932 275 400, ext. 4182\4523 > Mobile: (+34) 666 186 748 > Fax: (+34) 932 275 455 > [email protected] > > -- Isaac Cano Bioinformatics Linkcare Health Services SL C/Villarroel 170 08036 - Barcelona Tel.: (+34)932 275 400, ext. 4182\4523 Mobile: (+34) 666 186 748 Fax: (+34) 932 275 455 [email protected]
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