Hi Minhan, this is because Esnembl is already on version 65 and BioMart still on version 64. (it is now being updated to version 65 so the two should be in sync soon)
a 2011/12/31 yi minhan <[email protected]> > I found the difference between the portal of www.biomart.org and > *webpage* of biomart link of ensembl（ > http://www.ensembl.org/biomart/martview/143defd26f12b9c247297b0a0b8b0f04 ）. > When I download the sequences using ensembl IDs, The portal of > www.biomart.org is faster than biomart link of ensembl，but some IDs > can only download from the link and can‘t download from portal of > www.biomart.org. Why? How to explain this > phenomenon？ps. FBgn0262739 is > an example. > > > minhan yi > > > -----原始邮件----- > *发件人:* "Arek Kasprzyk" <[email protected]> > *发送时间:* 2011年12月30日 星期五 > > *收件人:* "yi minhan" <[email protected]> > *抄送:* > *主题:* Re: Re:How can I download Orthologs' coding sequeues in batch > > > Yes, right now, this is how you have to do it I am afraid. We may > reconfigure the portal in the future so that you will be able to retrive it > on one go > > a > > > On Thu, Dec 29, 2011 at 12:28 PM, yi minhan <[email protected]> wrote: > >> As you kown,NCBI can download sequences in batch Entrez,but some >> sequences can't be found in NCBI,so I have to down load them from Ensembl. >> I understand what you mean. But the 20 genes of interest have orthologs >> in 46 different species,do I have to download them for 46 times? >> >> Best wishes. >> >> Minhan Yi >> >> -----原始邮件----- >> *发件人:* "Arek Kasprzyk" <[email protected]> >> *发送时间:* 2011年12月29日 星期四 >> *收件人:* "yi minhan" <[email protected]> >> *抄送:* [email protected] >> *主题:* Re: [BioMart Users] How can I download Orthologs' coding sequeues >> in batch >> >> >> Dear Minhan, >> You can download sequences for each species at a time. Go to >> www.biomart.org and click 'BioPortal'. Under 'Tools' choose 'Sequence >> Retrieval'. Choose dataset of your choice, choose 'coding sequence', click >> 'Filters' and input your ids in the box under 'entries with the following >> ids'. click 'Go'. >> >> hope this helps, >> a >> >> >> On Thu, Dec 29, 2011 at 9:59 AM, yi minhan <[email protected]> wrote: >> >>> Hi,I have many Orthologs ensembl Identifiers included in different >>> species， and I want to download their coding sequeues in batch in >>> ensembl,just as batch Entrez. I find BioMart can't do,How can I do? >>> Best wishes. >>> >>> Minhan Yi From Wuhan University,China >>> >>> >>> >>> _______________________________________________ >>> Users mailing list >>> [email protected] >>> https://lists.biomart.org/mailman/listinfo/users >>> >> >> >> > >
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