Hello I'm using the biomaRt package in R to map RefSeq mRNA ids to Ensemble
Gene Ids.
The code I'm using and an example of the results are as follows:
> mart=useMart("ensembl", dataset="mmusculus_gene_ensembl")
> getBM(attributes=c("refseq_mrna", "ensembl_gene_id"),
+ filters="refseq_mrna",
+ values="NM_175666",
+ mart=mart,
+ uniqueRows=T)
refseq_mrna ensembl_gene_id
1 NM_175666 ENSMUSG00000058385
2 NM_175666 ENSMUSG00000047246
3 NM_175666 ENSMUSG00000018102
>
The result for the biomart web interface (and the ensembl site itself) is:
NM_175666 ENSMUSG00000050936
The Ensembl Gene Id above doesn't show up in the results from biomaRt.
Are there any thoughts about what might be happening?
Thank you,
Tyler Funnell
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