Dear Bahar,
Have you tried the BioPortal ID converter? You can upload your file
directly there
( http://central.biomart.org/converter/#!/ID_converter/gene_ensembl_config_2
 )

a


On Wed, Mar 28, 2012 at 12:29 PM, Baharak Saberidokht
<[email protected]>wrote:

> Hi,
> I have problem,and i was wondering if you could help me in it .
> I have 97480 entries,which are ENSG id's and i want to convert them to
> Entrez Gene Id  .
> I know how i should do it through biomoart and did it for very small
> subset of my data . However, this file is very big ,and it took more than
> one day when i want to use my list od ID's as a filter. Is there anyway to
> handle this problem? Can i send this long list to the specific server and
> it be run there?
> Thanks
> Bahar
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