Hi Achille, Please try rc6 and check if the problem persists. the rc7 release was never officially tested. Please also let me know why you are trying to materialize. Perhaps we can find the way round your problem
a On Thu, Jun 21, 2012 at 6:44 PM, Achille Zappa <[email protected]>wrote: > HI ! > > I'm trying a local deployment of biomart 0.8 candidate 0_7. > I have a problem when i want to materialize a dataset. In fact when i push > the "materialize" right-click menu button... > nothing happens in the configurator ! and on the terminal i got this error: > > Exception in thread "AWT-EventQueue-1" java.lang.NullPointerException > at > org.biomart.configurator.view.gui.dialogs.SaveDDLDialog$4.itemStateChanged(SaveDDLDialog.java:274) > at javax.swing.JComboBox.fireItemStateChanged(JComboBox.java:1222) > at javax.swing.JComboBox.selectedItemChanged(JComboBox.java:1270) > at javax.swing.JComboBox.contentsChanged(JComboBox.java:1326) > at > javax.swing.AbstractListModel.fireContentsChanged(AbstractListModel.java:117) > at > javax.swing.DefaultComboBoxModel.setSelectedItem(DefaultComboBoxModel.java:105) > at javax.swing.JComboBox.setSelectedItem(JComboBox.java:574) > at > org.biomart.configurator.view.gui.dialogs.SaveDDLDialog.<init>(SaveDDLDialog.java:388) > at > org.biomart.configurator.view.menu.ContextMenuConstructor.actionPerformed(ContextMenuConstructor.java:681) > at > javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2012) > at > javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2335) > at > javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:404) > at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259) > at javax.swing.AbstractButton.doClick(AbstractButton.java:374) > at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:829) > at > javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:873) > at java.awt.Component.processMouseEvent(Component.java:6268) > at javax.swing.JComponent.processMouseEvent(JComponent.java:3267) > at java.awt.Component.processEvent(Component.java:6033) > at java.awt.Container.processEvent(Container.java:2045) > at java.awt.Component.dispatchEventImpl(Component.java:4629) > at java.awt.Container.dispatchEventImpl(Container.java:2103) > at java.awt.Component.dispatchEvent(Component.java:4455) > at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4633) > at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4297) > at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4227) > at java.awt.Container.dispatchEventImpl(Container.java:2089) > at java.awt.Window.dispatchEventImpl(Window.java:2517) > at java.awt.Component.dispatchEvent(Component.java:4455) > at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:649) > at java.awt.EventQueue.access$000(EventQueue.java:96) > at java.awt.EventQueue$1.run(EventQueue.java:608) > at java.awt.EventQueue$1.run(EventQueue.java:606) > at java.security.AccessController.doPrivileged(Native Method) > at > java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:105) > at > java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:116) > at java.awt.EventQueue$2.run(EventQueue.java:622) > at java.awt.EventQueue$2.run(EventQueue.java:620) > at java.security.AccessController.doPrivileged(Native Method) > at > java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:105) > at java.awt.EventQueue.dispatchEvent(EventQueue.java:619) > at e.debug.EventDispatchThreadHangMonitor.dispatchEvent(Unknown Source) > at > java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:275) > at > java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:200) > at > java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:190) > at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:185) > at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:177) > at java.awt.EventDispatchThread.run(EventDispatchThread.java:138) > > > I tried this on 3 different PC with Ubuntu (11.10 , 12.04) > different datasets.. COSMIC59 , SNP -- > "ant build successful" , martrunner.sh seems running... > > Could you help me please . > > Best regards, > Achille > > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users > > -- Arek Kasprzyk, MD, MSc, PhD BioMart Project Lead www.biomart.org
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