On 09/07/2012 19:25, Wiedner, Susan wrote:
Hello,
I am trying to use Biomart on the EnsemblFungi website to pull out
orthologs for a specific protein list from three closely related fungi:
Aspergillus fumigatus, Neosartorya fischeri, and Aspergillus clavatus.
I am able to retrieve orthologs, and bi-directional % identities using
the Biomart tool for most of my protein list. However, some of my query
proteins are returned with no orthologs listed.
Hi Susan,
Sorry to hear you're having problems - can you let me know some example
proteins for which you're not getting the orthologues you expect? If you
could do that, we'll try and work out whats going on!
Best,
Dan.
--
Dan Staines, PhD Ensembl Genomes Technical Coordinator
EMBL-EBI Tel: +44-(0)1223-492507
Wellcome Trust Genome Campus Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK http://www.ensemblgenomes.org/
_______________________________________________
Users mailing list
[email protected]
https://lists.biomart.org/mailman/listinfo/users
