Hi Adam, could you send me your MySQL schema so that i can reproduce the problem here?
a On Fri, Aug 3, 2012 at 1:18 AM, Adam Wright <[email protected]> wrote: > Hi BioMart Users, > > > I am trying to create a BioMart instance and have run into an error that I > would appreciate help diagnosing. > > I set up the mart with MartBuilder 0.7 and am trying to run the > configuration and website with BioMart 0.8. Just as a side note, I am using > MartBuilder 0.7 instead of 0.8 because I am needing to manage the relations > between tables and other features that I wasn't able to do with version > 0.8. I am not sure what is going wrong exactly but, I am getting an error > when trying to query attributes from a dimension table through the web > interface. I have attached the error log for this. Also when I try to use > mart editor 0.7 it gives the error that the data-sets do not exist. Also it > appears as if both MartConfigurator and MartEditor are aware of the > relations all of the relationships. > > I have everything setup on my local machine. I am using mySQL and > connecting with a user that has full privileges to the databases on the > mySQL server. > > Please let me know if there is anything I am missing or if you need any > more information. Help would be greatly appreciated. > > Regards, > Adam Wright > Bioinformatics Software Developer > 647-260-6479 > > Ontario Institute for Cancer Research > MaRS Centre, South Tower > 101 College Street, Suite 800 > Toronto, Ontario, Canada M5G 0A3 > > Toll-free: 1-866-678-6427 > www.oicr.on.ca > > This message and any attachments may contain confidential and/or > privileged information for the sole use of the intended recipient. Any > review or distribution by anyone other than the person for whom it was > originally intended is strictly prohibited. If you have received this > message in error, please contact the sender and delete all copies. > Opinions, conclusions or other information contained in this message may > not be that of the organization. > ------------------------------ > *From:* Joachim Baran > *Sent:* 02 August 2012 16:34 > *To:* Adam Wright > *Subject:* Exception. > > > > > *Joachim Baran, PhD** > *Database/Application Programmer, Informatics and Bio-computing > > *Ontario Institute for Cancer Research* > MaRS Centre, South Tower > 101 College Street, Suite 800 > Toronto, Ontario, Canada M5G 0A3 > > Tel: 647-258-4319 > Toll-free: 1-866-678-6427 > www.oicr.on.ca > > This message and any attachments may contain confidential and/or > privileged information for the sole use of the intended recipient. Any > review or distribution by anyone other than the person for whom it was > originally intended is strictly prohibited. If you have received this > message in error, please contact the sender and delete all copies. > Opinions, conclusions or other information contained in this message may > not be that of the organization. > > > > > > _______________________________________________ > Users mailing list > [email protected] > https://lists.biomart.org/mailman/listinfo/users > > -- Arek Kasprzyk, MD, MSc, PhD BioMart Project Lead www.biomart.org
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