Hi, i just installed Biomart 0.8 candidate 6 and tried to deploy the quick start example. I saw a similar issue posted in March 2011 (https://lists.biomart.org/pipermail/users/2011-March/001405.html)
Whenever I click Start Server, I see the loading bar, but then I constantly wait 2minutes until an error message like "timeout, server took more than 2 minutes to start, exiting now" (not the exact message) Here is a copy of the messages in the terminal: ---- animalgenomics:/home/krue/bin/biomart/release-0_8-candidate_6# ./dist/scripts/martconfigurator.sh Starting MartConfigurator please wait .... [AWT-EventQueue-0] INFO martconfigurator - ...martconfigurator started. [AWT-EventQueue-0] INFO martconfigurator - Loading resources from org/biomart/configurator/resources/messages [AWT-EventQueue-0] INFO martconfigurator - Done loading resources [AWT-EventQueue-0] INFO martconfigurator - Done loading settings [SwingWorker-pool-1-thread-1] INFO martconfigurator - Done saving settings [Thread-6] INFO martconfigurator - ./scripts/biomart-server.sh stop [Thread-6] INFO martconfigurator - stop exitValue: 0 [Thread-6] INFO martconfigurator - ./scripts/biomart-server.sh start [Thread-6] INFO martconfigurator - <Info> [Thread-6] INFO martconfigurator - Invalid maximum heap size: -Xmx4096m [Thread-6] INFO martconfigurator - The specified size exceeds the maximum representable size. [Thread-6] INFO martconfigurator - </Info> [Thread-6] INFO martconfigurator - start exitValue: 0 ---- Nothing shows up on port 9000 after the two minutes. Although the button now offers "Stop Server". I did point to the xml file and the registry key. I tried to run MartConfigurator as superuser to avoid access right limitations. Any idea? Thanks in advance, -- Kévin RUE-ALBRECHT Computational Infection Biology PhD Programme University College Dublin Ireland http://fr.linkedin.com/pub/k%C3%A9vin-rue/28/a45/149/en _______________________________________________ Users mailing list [email protected] https://lists.biomart.org/mailman/listinfo/users
